Listeria phage LP-HM00113468

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Trabyvirinae; Slepowronvirus; Listeria virus LPHM00113468

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 54 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7D4XKJ3|A0A7D4XKJ3_9CAUD Uncharacterized protein OS=Listeria phage LP-HM00113468 OX=2744802 PE=4 SV=1
MM1 pKa = 7.39TFYY4 pKa = 11.31DD5 pKa = 4.76FLITYY10 pKa = 7.6YY11 pKa = 10.8LSEE14 pKa = 4.39NSPLGDD20 pKa = 3.58LAHH23 pKa = 7.48DD24 pKa = 3.91VQLDD28 pKa = 3.86GNFPTEE34 pKa = 4.28SKK36 pKa = 10.92SEE38 pKa = 4.04DD39 pKa = 3.5EE40 pKa = 3.96IRR42 pKa = 11.84DD43 pKa = 3.63YY44 pKa = 10.98FSNIGTPGFQEE55 pKa = 4.68ALDD58 pKa = 3.73EE59 pKa = 4.35ALNYY63 pKa = 9.26FRR65 pKa = 11.84RR66 pKa = 11.84LL67 pKa = 3.28

Molecular weight: 7.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7D5BK37|A0A7D5BK37_9CAUD Uncharacterized protein OS=Listeria phage LP-HM00113468 OX=2744802 PE=4 SV=1
MM1 pKa = 6.99TSYY4 pKa = 11.05YY5 pKa = 10.42YY6 pKa = 10.61SRR8 pKa = 11.84SLANVNKK15 pKa = 10.25LADD18 pKa = 3.78NTKK21 pKa = 9.24VAARR25 pKa = 11.84KK26 pKa = 9.61LLDD29 pKa = 3.09WAEE32 pKa = 3.93NSGIEE37 pKa = 3.99VLIYY41 pKa = 8.37EE42 pKa = 4.8TIRR45 pKa = 11.84TKK47 pKa = 10.13EE48 pKa = 3.77QQSANVASGASQTMRR63 pKa = 11.84SYY65 pKa = 11.3HH66 pKa = 6.34LVGQALDD73 pKa = 3.54FVMAKK78 pKa = 10.23GKK80 pKa = 7.13TVNWGGYY87 pKa = 9.04RR88 pKa = 11.84SANAKK93 pKa = 10.22KK94 pKa = 10.34FIAKK98 pKa = 10.04AKK100 pKa = 10.44ALGFTWGGDD109 pKa = 2.69WDD111 pKa = 4.15GFVDD115 pKa = 4.1NPHH118 pKa = 6.53LQFEE122 pKa = 4.69YY123 pKa = 10.36KK124 pKa = 10.58GYY126 pKa = 8.59GTDD129 pKa = 3.28TFGKK133 pKa = 9.48GASANVPAKK142 pKa = 10.53PNTQSNSSLGLVDD155 pKa = 3.61YY156 pKa = 11.2MNMNKK161 pKa = 9.89LDD163 pKa = 3.62SSFANRR169 pKa = 11.84KK170 pKa = 8.91KK171 pKa = 10.51LAAKK175 pKa = 10.29YY176 pKa = 9.99GIKK179 pKa = 10.25NYY181 pKa = 10.77SGTASQNTTLLAKK194 pKa = 10.48LKK196 pKa = 10.2AGKK199 pKa = 8.67PHH201 pKa = 6.63TPASNNTYY209 pKa = 8.55YY210 pKa = 10.59TEE212 pKa = 4.24NPGKK216 pKa = 10.29IKK218 pKa = 9.71TLVQCDD224 pKa = 4.47LYY226 pKa = 11.64NSVDD230 pKa = 3.86FTASHH235 pKa = 6.05KK236 pKa = 9.79TGGTYY241 pKa = 10.22PPGTIFTIAGMAKK254 pKa = 9.25TKK256 pKa = 10.69GGTPRR261 pKa = 11.84LKK263 pKa = 9.91TKK265 pKa = 10.27SGYY268 pKa = 10.56FLTANKK274 pKa = 10.2KK275 pKa = 8.79FVKK278 pKa = 10.36KK279 pKa = 10.34II280 pKa = 3.41

Molecular weight: 30.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

54

0

54

11296

50

1420

209.2

23.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.905 ± 0.824

0.779 ± 0.142

6.356 ± 0.281

7.268 ± 0.433

4.497 ± 0.338

6.046 ± 0.624

1.567 ± 0.169

7.047 ± 0.32

9.03 ± 0.487

8.162 ± 0.285

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.505 ± 0.108

6.516 ± 0.197

2.62 ± 0.197

3.585 ± 0.222

3.718 ± 0.325

6.454 ± 0.371

5.63 ± 0.285

5.887 ± 0.243

1.292 ± 0.128

4.134 ± 0.375
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski