Canis familiaris papillomavirus 11

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Chipapillomavirus; Chipapillomavirus 1

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G4XF78|G4XF78_9PAPI Replication protein E1 OS=Canis familiaris papillomavirus 11 OX=1091166 GN=E1 PE=3 SV=1
MM1 pKa = 7.39IGKK4 pKa = 9.27DD5 pKa = 2.96ATLRR9 pKa = 11.84DD10 pKa = 4.25IILEE14 pKa = 4.05EE15 pKa = 4.11QPNPVDD21 pKa = 5.03NLWCDD26 pKa = 3.53EE27 pKa = 4.13EE28 pKa = 4.86LAPSDD33 pKa = 4.41DD34 pKa = 4.44EE35 pKa = 5.11EE36 pKa = 4.82EE37 pKa = 4.18EE38 pKa = 4.34SPPRR42 pKa = 11.84QNLKK46 pKa = 10.06PFRR49 pKa = 11.84IEE51 pKa = 4.34TNCGTCDD58 pKa = 3.24RR59 pKa = 11.84GIKK62 pKa = 9.86IVVLCTRR69 pKa = 11.84EE70 pKa = 4.62GILSLEE76 pKa = 4.14TLLCRR81 pKa = 11.84NTSLCCPACAATYY94 pKa = 10.18KK95 pKa = 10.45FEE97 pKa = 5.43HH98 pKa = 6.75GGG100 pKa = 3.39

Molecular weight: 11.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G4XF82|G4XF82_9PAPI Multifunctional fusion protein OS=Canis familiaris papillomavirus 11 OX=1091166 GN=L1 PE=3 SV=1
MM1 pKa = 7.68LYY3 pKa = 10.68KK4 pKa = 10.51LRR6 pKa = 11.84PRR8 pKa = 11.84MTQGNGEE15 pKa = 4.36LLSSHH20 pKa = 6.68FRR22 pKa = 11.84QLSGLSLGLAITPLYY37 pKa = 10.43IFLLCFYY44 pKa = 9.5TFVLLYY50 pKa = 9.05FRR52 pKa = 11.84PLTQRR57 pKa = 11.84VSATT61 pKa = 3.24

Molecular weight: 7.06 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

1

8

3182

61

1016

397.8

44.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.348 ± 0.592

2.106 ± 0.552

5.877 ± 0.373

5.751 ± 0.445

4.243 ± 0.519

7.165 ± 0.71

2.106 ± 0.152

4.054 ± 0.326

4.085 ± 0.514

8.642 ± 0.68

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.823 ± 0.211

4.023 ± 0.437

8.108 ± 1.119

4.494 ± 0.355

6.882 ± 0.537

7.857 ± 0.442

6.285 ± 0.447

5.877 ± 0.733

1.508 ± 0.272

2.766 ± 0.237
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski