Mangrovibacterium marinum

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Marinilabiliales; Prolixibacteraceae; Mangrovibacterium

Average proteome isoelectric point is 6.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3633 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T5C0B1|A0A2T5C0B1_9BACT tRNA uridine(34) hydroxylase OS=Mangrovibacterium marinum OX=1639118 GN=trhO PE=3 SV=1
MM1 pKa = 7.03KK2 pKa = 9.71TIHH5 pKa = 7.24KK6 pKa = 10.12LFLLLAVVAFGACEE20 pKa = 4.13GPMGPPGYY28 pKa = 10.22DD29 pKa = 3.2GLDD32 pKa = 3.71GQDD35 pKa = 3.56GQDD38 pKa = 3.26GVNILGTVFEE48 pKa = 4.66VNGDD52 pKa = 3.54FTEE55 pKa = 4.23NNQYY59 pKa = 8.53TLYY62 pKa = 11.04YY63 pKa = 9.21PFPDD67 pKa = 4.31DD68 pKa = 3.64FQVYY72 pKa = 10.05NGDD75 pKa = 3.51AVVVYY80 pKa = 9.55ILWKK84 pKa = 10.66VVDD87 pKa = 5.05GLDD90 pKa = 3.08VWRR93 pKa = 11.84ALPQTIFLEE102 pKa = 4.7SGAFQYY108 pKa = 11.26NFDD111 pKa = 3.96YY112 pKa = 8.29TTGDD116 pKa = 3.19VQIFIDD122 pKa = 5.13GEE124 pKa = 4.31LDD126 pKa = 3.8PAWLGSGDD134 pKa = 5.2LVDD137 pKa = 3.38QTFRR141 pKa = 11.84IAVIPADD148 pKa = 4.01LYY150 pKa = 10.68SNKK153 pKa = 10.61SIDD156 pKa = 3.11ITNYY160 pKa = 10.8DD161 pKa = 3.64EE162 pKa = 4.45VNRR165 pKa = 11.84AMLLWGGKK173 pKa = 8.13INRR176 pKa = 11.84ATLVNSDD183 pKa = 3.67LL184 pKa = 4.05

Molecular weight: 20.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T5C0Y8|A0A2T5C0Y8_9BACT Gliding motility-associated protein GldM OS=Mangrovibacterium marinum OX=1639118 GN=C8N47_10913 PE=4 SV=1
MM1 pKa = 6.9TRR3 pKa = 11.84IVRR6 pKa = 11.84LTTNYY11 pKa = 9.88SRR13 pKa = 11.84SRR15 pKa = 11.84SHH17 pKa = 6.69SVQSSPFGEE26 pKa = 4.3LEE28 pKa = 4.03GGFPSHH34 pKa = 6.79PRR36 pKa = 11.84DD37 pKa = 3.4VGKK40 pKa = 8.64CTKK43 pKa = 10.05AANFEE48 pKa = 4.19FPITNIQYY56 pKa = 10.54RR57 pKa = 11.84MRR59 pKa = 11.84NRR61 pKa = 11.84EE62 pKa = 3.72TTLPQTPKK70 pKa = 10.78GAA72 pKa = 3.69

Molecular weight: 8.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3633

0

3633

1323685

27

6431

364.4

40.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.52 ± 0.041

0.942 ± 0.017

5.757 ± 0.032

6.488 ± 0.04

4.832 ± 0.032

6.884 ± 0.038

1.845 ± 0.018

6.681 ± 0.036

6.301 ± 0.049

9.526 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.416 ± 0.024

5.073 ± 0.033

3.857 ± 0.024

4.036 ± 0.033

4.33 ± 0.031

6.297 ± 0.037

5.358 ± 0.066

6.49 ± 0.035

1.293 ± 0.017

4.077 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski