Amino acid dipepetide frequency for Erigeron breviscapus amalgavirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
11.872AlaAla: 11.872 ± 3.47
2.095AlaCys: 2.095 ± 1.139
2.793AlaAsp: 2.793 ± 0.101
4.888AlaGlu: 4.888 ± 1.596
4.888AlaPhe: 4.888 ± 0.178
8.38AlaGly: 8.38 ± 1.115
0.0AlaHis: 0.0 ± 0.0
0.698AlaIle: 0.698 ± 0.38
4.888AlaLys: 4.888 ± 0.178
8.38AlaLeu: 8.38 ± 0.303
3.492AlaMet: 3.492 ± 0.481
2.095AlaAsn: 2.095 ± 1.697
4.19AlaPro: 4.19 ± 0.557
2.095AlaGln: 2.095 ± 1.697
4.19AlaArg: 4.19 ± 0.557
1.397AlaSer: 1.397 ± 0.759
3.492AlaThr: 3.492 ± 1.899
4.888AlaVal: 4.888 ± 1.596
0.698AlaTrp: 0.698 ± 0.38
3.492AlaTyr: 3.492 ± 0.937
0.0AlaXaa: 0.0 ± 0.0
Cys
1.397CysAla: 1.397 ± 0.759
0.0CysCys: 0.0 ± 0.0
0.698CysAsp: 0.698 ± 0.38
0.0CysGlu: 0.0 ± 0.0
1.397CysPhe: 1.397 ± 0.759
0.698CysGly: 0.698 ± 0.38
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
0.698CysLeu: 0.698 ± 0.38
0.698CysMet: 0.698 ± 0.38
0.0CysAsn: 0.0 ± 0.0
0.698CysPro: 0.698 ± 0.38
2.095CysGln: 2.095 ± 0.279
2.095CysArg: 2.095 ± 0.279
0.698CysSer: 0.698 ± 0.38
0.698CysThr: 0.698 ± 0.38
0.698CysVal: 0.698 ± 0.38
0.0CysTrp: 0.0 ± 0.0
0.698CysTyr: 0.698 ± 0.38
0.0CysXaa: 0.0 ± 0.0
Asp
5.587AspAla: 5.587 ± 0.202
2.095AspCys: 2.095 ± 0.279
4.19AspAsp: 4.19 ± 2.278
4.19AspGlu: 4.19 ± 0.557
4.19AspPhe: 4.19 ± 0.86
5.587AspGly: 5.587 ± 0.202
2.095AspHis: 2.095 ± 1.139
4.19AspIle: 4.19 ± 0.557
1.397AspLys: 1.397 ± 0.658
2.793AspLeu: 2.793 ± 0.101
0.0AspMet: 0.0 ± 0.0
4.19AspAsn: 4.19 ± 0.86
2.095AspPro: 2.095 ± 0.279
2.095AspGln: 2.095 ± 1.697
2.793AspArg: 2.793 ± 0.101
1.397AspSer: 1.397 ± 0.759
2.793AspThr: 2.793 ± 1.317
2.095AspVal: 2.095 ± 1.139
2.793AspTrp: 2.793 ± 0.101
1.397AspTyr: 1.397 ± 0.759
0.0AspXaa: 0.0 ± 0.0
Glu
6.285GluAla: 6.285 ± 2.254
0.698GluCys: 0.698 ± 0.38
4.888GluAsp: 4.888 ± 0.178
6.983GluGlu: 6.983 ± 3.292
2.793GluPhe: 2.793 ± 1.317
2.095GluGly: 2.095 ± 1.139
2.793GluHis: 2.793 ± 1.317
4.19GluIle: 4.19 ± 0.557
3.492GluLys: 3.492 ± 0.481
7.682GluLeu: 7.682 ± 1.495
1.397GluMet: 1.397 ± 0.759
0.698GluAsn: 0.698 ± 1.038
4.888GluPro: 4.888 ± 1.596
4.888GluGln: 4.888 ± 0.178
9.777GluArg: 9.777 ± 1.773
0.0GluSer: 0.0 ± 0.0
3.492GluThr: 3.492 ± 1.899
9.078GluVal: 9.078 ± 0.735
1.397GluTrp: 1.397 ± 0.658
2.095GluTyr: 2.095 ± 0.279
0.0GluXaa: 0.0 ± 0.0
Phe
3.492PheAla: 3.492 ± 0.481
1.397PheCys: 1.397 ± 0.658
4.19PheAsp: 4.19 ± 0.557
4.888PheGlu: 4.888 ± 0.178
2.095PhePhe: 2.095 ± 0.279
3.492PheGly: 3.492 ± 0.481
0.698PheHis: 0.698 ± 0.38
0.698PheIle: 0.698 ± 0.38
1.397PheLys: 1.397 ± 0.759
4.888PheLeu: 4.888 ± 0.178
0.698PheMet: 0.698 ± 0.38
0.698PheAsn: 0.698 ± 0.38
2.095PhePro: 2.095 ± 0.279
0.0PheGln: 0.0 ± 0.0
2.793PheArg: 2.793 ± 0.101
4.888PheSer: 4.888 ± 0.178
0.698PheThr: 0.698 ± 0.38
2.095PheVal: 2.095 ± 1.139
1.397PheTrp: 1.397 ± 0.759
0.698PheTyr: 0.698 ± 0.38
0.0PheXaa: 0.0 ± 0.0
Gly
2.095GlyAla: 2.095 ± 1.139
0.698GlyCys: 0.698 ± 0.38
3.492GlyAsp: 3.492 ± 3.773
5.587GlyGlu: 5.587 ± 0.202
3.492GlyPhe: 3.492 ± 0.481
13.966GlyGly: 13.966 ± 0.505
0.698GlyHis: 0.698 ± 0.38
3.492GlyIle: 3.492 ± 1.899
2.095GlyLys: 2.095 ± 1.139
8.38GlyLeu: 8.38 ± 1.721
1.397GlyMet: 1.397 ± 0.759
1.397GlyAsn: 1.397 ± 0.759
4.19GlyPro: 4.19 ± 0.86
4.888GlyGln: 4.888 ± 0.178
4.888GlyArg: 4.888 ± 1.24
1.397GlySer: 1.397 ± 0.658
2.793GlyThr: 2.793 ± 0.101
11.173GlyVal: 11.173 ± 5.268
1.397GlyTrp: 1.397 ± 0.759
0.0GlyTyr: 0.0 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.698HisCys: 0.698 ± 0.38
1.397HisAsp: 1.397 ± 0.658
2.095HisGlu: 2.095 ± 0.279
1.397HisPhe: 1.397 ± 0.759
2.793HisGly: 2.793 ± 0.101
1.397HisHis: 1.397 ± 0.759
1.397HisIle: 1.397 ± 0.658
1.397HisLys: 1.397 ± 0.658
2.095HisLeu: 2.095 ± 0.279
0.698HisMet: 0.698 ± 0.551
0.0HisAsn: 0.0 ± 0.0
1.397HisPro: 1.397 ± 0.759
0.698HisGln: 0.698 ± 1.038
1.397HisArg: 1.397 ± 0.759
0.0HisSer: 0.0 ± 0.0
0.698HisThr: 0.698 ± 0.38
2.793HisVal: 2.793 ± 1.519
0.0HisTrp: 0.0 ± 0.0
0.698HisTyr: 0.698 ± 0.38
0.0HisXaa: 0.0 ± 0.0
Ile
0.698IleAla: 0.698 ± 1.038
0.698IleCys: 0.698 ± 0.38
3.492IleAsp: 3.492 ± 0.481
3.492IleGlu: 3.492 ± 0.481
1.397IlePhe: 1.397 ± 0.658
2.095IleGly: 2.095 ± 1.139
2.095IleHis: 2.095 ± 1.139
4.888IleIle: 4.888 ± 1.24
2.095IleLys: 2.095 ± 0.279
4.19IleLeu: 4.19 ± 0.86
0.0IleMet: 0.0 ± 0.0
0.0IleAsn: 0.0 ± 0.0
1.397IlePro: 1.397 ± 0.759
3.492IleGln: 3.492 ± 0.937
4.19IleArg: 4.19 ± 0.557
2.793IleSer: 2.793 ± 0.101
0.0IleThr: 0.0 ± 0.0
2.793IleVal: 2.793 ± 0.101
0.698IleTrp: 0.698 ± 0.38
0.0IleTyr: 0.0 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
4.19LysAla: 4.19 ± 0.86
0.0LysCys: 0.0 ± 0.0
3.492LysAsp: 3.492 ± 0.937
5.587LysGlu: 5.587 ± 2.634
3.492LysPhe: 3.492 ± 1.899
3.492LysGly: 3.492 ± 0.481
1.397LysHis: 1.397 ± 0.658
3.492LysIle: 3.492 ± 0.937
9.777LysLys: 9.777 ± 3.191
6.983LysLeu: 6.983 ± 0.961
0.698LysMet: 0.698 ± 0.38
1.397LysAsn: 1.397 ± 0.759
0.698LysPro: 0.698 ± 0.38
4.19LysGln: 4.19 ± 1.975
4.19LysArg: 4.19 ± 0.86
0.698LysSer: 0.698 ± 0.38
0.698LysThr: 0.698 ± 0.38
0.698LysVal: 0.698 ± 1.038
0.0LysTrp: 0.0 ± 0.0
0.698LysTyr: 0.698 ± 0.38
0.0LysXaa: 0.0 ± 0.0
Leu
3.492LeuAla: 3.492 ± 0.937
0.698LeuCys: 0.698 ± 0.38
4.888LeuAsp: 4.888 ± 1.24
9.078LeuGlu: 9.078 ± 2.153
5.587LeuPhe: 5.587 ± 0.202
4.19LeuGly: 4.19 ± 0.86
1.397LeuHis: 1.397 ± 0.658
1.397LeuIle: 1.397 ± 0.658
3.492LeuLys: 3.492 ± 0.481
10.475LeuLeu: 10.475 ± 4.278
2.793LeuMet: 2.793 ± 1.519
3.492LeuAsn: 3.492 ± 0.481
7.682LeuPro: 7.682 ± 1.495
2.793LeuGln: 2.793 ± 0.101
13.268LeuArg: 13.268 ± 1.543
8.38LeuSer: 8.38 ± 0.303
4.888LeuThr: 4.888 ± 1.596
6.285LeuVal: 6.285 ± 2.0
1.397LeuTrp: 1.397 ± 0.759
2.793LeuTyr: 2.793 ± 0.101
0.0LeuXaa: 0.0 ± 0.0
Met
0.698MetAla: 0.698 ± 0.38
1.397MetCys: 1.397 ± 0.759
2.793MetAsp: 2.793 ± 0.101
1.397MetGlu: 1.397 ± 0.759
0.698MetPhe: 0.698 ± 0.38
1.397MetGly: 1.397 ± 0.658
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
0.698MetLys: 0.698 ± 0.38
0.698MetLeu: 0.698 ± 0.38
1.397MetMet: 1.397 ± 0.759
2.793MetAsn: 2.793 ± 0.101
1.397MetPro: 1.397 ± 0.759
0.0MetGln: 0.0 ± 0.0
2.095MetArg: 2.095 ± 1.139
0.698MetSer: 0.698 ± 0.38
0.0MetThr: 0.0 ± 0.0
3.492MetVal: 3.492 ± 1.899
0.698MetTrp: 0.698 ± 0.38
1.397MetTyr: 1.397 ± 0.658
0.0MetXaa: 0.0 ± 0.0
Asn
2.095AsnAla: 2.095 ± 0.279
0.0AsnCys: 0.0 ± 0.0
2.095AsnAsp: 2.095 ± 1.139
1.397AsnGlu: 1.397 ± 0.658
0.698AsnPhe: 0.698 ± 0.38
1.397AsnGly: 1.397 ± 0.759
1.397AsnHis: 1.397 ± 0.759
2.095AsnIle: 2.095 ± 0.279
0.0AsnLys: 0.0 ± 0.0
2.095AsnLeu: 2.095 ± 0.279
0.698AsnMet: 0.698 ± 0.38
0.698AsnAsn: 0.698 ± 0.38
1.397AsnPro: 1.397 ± 0.759
0.0AsnGln: 0.0 ± 0.0
2.793AsnArg: 2.793 ± 1.317
2.793AsnSer: 2.793 ± 0.101
0.0AsnThr: 0.0 ± 0.0
2.095AsnVal: 2.095 ± 1.139
0.698AsnTrp: 0.698 ± 1.038
1.397AsnTyr: 1.397 ± 0.658
0.0AsnXaa: 0.0 ± 0.0
Pro
3.492ProAla: 3.492 ± 0.937
0.698ProCys: 0.698 ± 0.38
1.397ProAsp: 1.397 ± 0.759
5.587ProGlu: 5.587 ± 1.216
1.397ProPhe: 1.397 ± 0.759
5.587ProGly: 5.587 ± 1.62
1.397ProHis: 1.397 ± 0.658
2.793ProIle: 2.793 ± 0.101
0.698ProLys: 0.698 ± 0.38
6.983ProLeu: 6.983 ± 0.456
0.698ProMet: 0.698 ± 0.38
1.397ProAsn: 1.397 ± 0.658
4.888ProPro: 4.888 ± 0.178
1.397ProGln: 1.397 ± 0.658
4.888ProArg: 4.888 ± 3.014
0.698ProSer: 0.698 ± 0.38
3.492ProThr: 3.492 ± 2.355
2.793ProVal: 2.793 ± 1.519
1.397ProTrp: 1.397 ± 0.759
0.698ProTyr: 0.698 ± 0.38
0.0ProXaa: 0.0 ± 0.0
Gln
4.888GlnAla: 4.888 ± 0.178
0.698GlnCys: 0.698 ± 0.38
2.095GlnAsp: 2.095 ± 0.279
2.095GlnGlu: 2.095 ± 1.697
2.793GlnPhe: 2.793 ± 1.317
2.793GlnGly: 2.793 ± 2.735
0.698GlnHis: 0.698 ± 0.38
1.397GlnIle: 1.397 ± 0.658
2.095GlnLys: 2.095 ± 0.279
4.888GlnLeu: 4.888 ± 0.178
0.0GlnMet: 0.0 ± 0.0
1.397GlnAsn: 1.397 ± 0.658
2.095GlnPro: 2.095 ± 0.279
3.492GlnGln: 3.492 ± 0.937
4.19GlnArg: 4.19 ± 0.557
0.0GlnSer: 0.0 ± 0.0
1.397GlnThr: 1.397 ± 0.658
4.19GlnVal: 4.19 ± 1.975
0.0GlnTrp: 0.0 ± 0.0
0.698GlnTyr: 0.698 ± 0.38
0.0GlnXaa: 0.0 ± 0.0
Arg
9.777ArgAla: 9.777 ± 0.355
0.0ArgCys: 0.0 ± 0.0
2.095ArgAsp: 2.095 ± 0.279
9.078ArgGlu: 9.078 ± 0.683
1.397ArgPhe: 1.397 ± 0.658
6.983ArgGly: 6.983 ± 1.874
2.095ArgHis: 2.095 ± 0.279
4.888ArgIle: 4.888 ± 2.658
4.19ArgLys: 4.19 ± 0.557
4.888ArgLeu: 4.888 ± 1.596
2.095ArgMet: 2.095 ± 0.279
0.698ArgAsn: 0.698 ± 1.038
5.587ArgPro: 5.587 ± 0.202
2.095ArgGln: 2.095 ± 1.697
10.475ArgArg: 10.475 ± 1.394
9.078ArgSer: 9.078 ± 2.153
3.492ArgThr: 3.492 ± 0.481
4.19ArgVal: 4.19 ± 2.278
2.793ArgTrp: 2.793 ± 0.101
1.397ArgTyr: 1.397 ± 0.759
0.0ArgXaa: 0.0 ± 0.0
Ser
4.19SerAla: 4.19 ± 0.557
1.397SerCys: 1.397 ± 0.759
4.19SerAsp: 4.19 ± 2.278
2.793SerGlu: 2.793 ± 0.101
1.397SerPhe: 1.397 ± 0.658
2.095SerGly: 2.095 ± 1.139
2.095SerHis: 2.095 ± 0.279
1.397SerIle: 1.397 ± 0.658
5.587SerLys: 5.587 ± 0.202
6.983SerLeu: 6.983 ± 0.456
0.698SerMet: 0.698 ± 0.38
1.397SerAsn: 1.397 ± 0.759
0.698SerPro: 0.698 ± 0.38
1.397SerGln: 1.397 ± 0.658
4.19SerArg: 4.19 ± 0.557
2.793SerSer: 2.793 ± 0.101
2.095SerThr: 2.095 ± 0.279
0.698SerVal: 0.698 ± 0.38
1.397SerTrp: 1.397 ± 0.759
0.0SerTyr: 0.0 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
4.888ThrAla: 4.888 ± 0.178
0.0ThrCys: 0.0 ± 0.0
1.397ThrAsp: 1.397 ± 0.759
0.698ThrGlu: 0.698 ± 1.038
0.698ThrPhe: 0.698 ± 0.38
4.19ThrGly: 4.19 ± 1.975
0.0ThrHis: 0.0 ± 0.0
0.698ThrIle: 0.698 ± 0.38
2.793ThrLys: 2.793 ± 1.519
1.397ThrLeu: 1.397 ± 0.759
0.698ThrMet: 0.698 ± 0.38
1.397ThrAsn: 1.397 ± 0.759
2.095ThrPro: 2.095 ± 1.697
0.698ThrGln: 0.698 ± 0.38
4.19ThrArg: 4.19 ± 0.557
3.492ThrSer: 3.492 ± 0.481
0.698ThrThr: 0.698 ± 1.038
3.492ThrVal: 3.492 ± 0.937
0.698ThrTrp: 0.698 ± 0.38
4.19ThrTyr: 4.19 ± 0.557
0.0ThrXaa: 0.0 ± 0.0
Val
4.888ValAla: 4.888 ± 0.178
0.0ValCys: 0.0 ± 0.0
5.587ValAsp: 5.587 ± 0.202
5.587ValGlu: 5.587 ± 0.202
2.793ValPhe: 2.793 ± 1.519
4.19ValGly: 4.19 ± 0.86
2.793ValHis: 2.793 ± 0.101
2.095ValIle: 2.095 ± 1.139
7.682ValLys: 7.682 ± 1.495
8.38ValLeu: 8.38 ± 0.303
3.492ValMet: 3.492 ± 2.084
0.698ValAsn: 0.698 ± 0.38
3.492ValPro: 3.492 ± 2.355
3.492ValGln: 3.492 ± 0.937
4.19ValArg: 4.19 ± 0.557
4.19ValSer: 4.19 ± 0.86
4.19ValThr: 4.19 ± 0.557
2.793ValVal: 2.793 ± 1.519
0.698ValTrp: 0.698 ± 0.38
0.698ValTyr: 0.698 ± 1.038
0.0ValXaa: 0.0 ± 0.0
Trp
2.095TrpAla: 2.095 ± 0.279
0.0TrpCys: 0.0 ± 0.0
0.698TrpAsp: 0.698 ± 0.38
3.492TrpGlu: 3.492 ± 0.481
0.698TrpPhe: 0.698 ± 0.38
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.698TrpIle: 0.698 ± 0.38
0.698TrpLys: 0.698 ± 1.038
3.492TrpLeu: 3.492 ± 0.481
0.698TrpMet: 0.698 ± 0.38
0.698TrpAsn: 0.698 ± 0.38
0.698TrpPro: 0.698 ± 0.38
0.698TrpGln: 0.698 ± 0.38
0.698TrpArg: 0.698 ± 0.38
0.698TrpSer: 0.698 ± 0.38
1.397TrpThr: 1.397 ± 0.759
1.397TrpVal: 1.397 ± 0.759
0.698TrpTrp: 0.698 ± 0.38
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.793TyrAla: 2.793 ± 1.317
0.0TyrCys: 0.0 ± 0.0
2.095TyrAsp: 2.095 ± 0.279
0.698TyrGlu: 0.698 ± 0.38
0.0TyrPhe: 0.0 ± 0.0
2.095TyrGly: 2.095 ± 1.139
0.0TyrHis: 0.0 ± 0.0
0.0TyrIle: 0.0 ± 0.0
1.397TyrLys: 1.397 ± 0.658
2.095TyrLeu: 2.095 ± 1.139
0.698TyrMet: 0.698 ± 1.038
0.698TyrAsn: 0.698 ± 0.38
0.698TyrPro: 0.698 ± 0.38
1.397TyrGln: 1.397 ± 0.759
0.0TyrArg: 0.0 ± 0.0
1.397TyrSer: 1.397 ± 0.759
1.397TyrThr: 1.397 ± 0.658
4.888TyrVal: 4.888 ± 1.596
0.698TyrTrp: 0.698 ± 0.38
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1433 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski