Weissella paramesenteroides ATCC 33313

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Weissella; Weissella paramesenteroides

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1952 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C5RBC3|C5RBC3_WEIPA Ribosome-binding factor A OS=Weissella paramesenteroides ATCC 33313 OX=585506 GN=rbfA PE=3 SV=1
MM1 pKa = 7.42YY2 pKa = 9.07LTFSDD7 pKa = 3.68TALQRR12 pKa = 11.84ISPLVTTDD20 pKa = 2.86TRR22 pKa = 11.84IALDD26 pKa = 3.92LDD28 pKa = 4.49DD29 pKa = 5.18GVGPFSNSATCTFDD43 pKa = 3.27VAFNLVLCQASDD55 pKa = 3.7LSDD58 pKa = 4.24DD59 pKa = 3.91FNMTIDD65 pKa = 3.71SDD67 pKa = 4.0LGPVYY72 pKa = 10.5IKK74 pKa = 10.56DD75 pKa = 3.71YY76 pKa = 8.73TTEE79 pKa = 4.05QLDD82 pKa = 3.59SALNLDD88 pKa = 3.26VDD90 pKa = 3.47HH91 pKa = 6.62YY92 pKa = 11.59LRR94 pKa = 11.84YY95 pKa = 9.79KK96 pKa = 10.85LSGPSGILDD105 pKa = 3.53PNVTLRR111 pKa = 11.84NLQPVGG117 pKa = 3.42

Molecular weight: 12.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C5R9Z2|C5R9Z2_WEIPA NLPA lipoprotein OS=Weissella paramesenteroides ATCC 33313 OX=585506 GN=HMPREF0877_0787 PE=3 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.69QPKK8 pKa = 8.34KK9 pKa = 7.47RR10 pKa = 11.84HH11 pKa = 5.71RR12 pKa = 11.84EE13 pKa = 3.7RR14 pKa = 11.84VHH16 pKa = 6.23GFRR19 pKa = 11.84KK20 pKa = 10.04RR21 pKa = 11.84MSTSNGRR28 pKa = 11.84KK29 pKa = 8.01VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.39GRR39 pKa = 11.84KK40 pKa = 8.52VLSAA44 pKa = 4.05

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1952

0

1952

574627

39

2324

294.4

32.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.311 ± 0.07

0.24 ± 0.012

5.853 ± 0.05

5.576 ± 0.057

4.262 ± 0.036

6.706 ± 0.048

2.137 ± 0.028

7.331 ± 0.054

5.998 ± 0.058

9.701 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.827 ± 0.029

4.801 ± 0.044

3.444 ± 0.031

4.614 ± 0.049

3.954 ± 0.043

5.943 ± 0.06

6.284 ± 0.039

7.389 ± 0.045

1.155 ± 0.022

3.475 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski