Cinnamomum micranthum f. kanehirae

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 26414 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A443NYE3|A0A443NYE3_9MAGN Transposon protein putative CACTA En/Spm sub-class OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01224800 PE=3 SV=1
MM1 pKa = 7.75ASFFTDD7 pKa = 4.39IISLDD12 pKa = 3.28GWNDD16 pKa = 3.17FSDD19 pKa = 3.75PTRR22 pKa = 11.84DD23 pKa = 3.57QLSLVALVYY32 pKa = 10.53EE33 pKa = 4.73DD34 pKa = 3.21RR35 pKa = 11.84TVFYY39 pKa = 11.26GEE41 pKa = 4.17YY42 pKa = 9.96KK43 pKa = 10.77CIGEE47 pKa = 4.32GANMTMRR54 pKa = 11.84VPYY57 pKa = 10.3AQGLNEE63 pKa = 4.17TQASPFLDD71 pKa = 2.72ISFINDD77 pKa = 3.43QQWLQPYY84 pKa = 8.27QQ85 pKa = 3.27

Molecular weight: 9.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3S3NNY2|A0A3S3NNY2_9MAGN Transmembrane protein 18 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00053100 PE=3 SV=1
MM1 pKa = 7.32IFSRR5 pKa = 11.84PSLPRR10 pKa = 11.84RR11 pKa = 11.84VSRR14 pKa = 11.84ARR16 pKa = 11.84AFSRR20 pKa = 11.84LLPPTSFQTPRR31 pKa = 11.84PLL33 pKa = 4.65

Molecular weight: 3.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

26414

0

26414

11631408

17

7258

440.4

49.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.702 ± 0.014

1.904 ± 0.009

5.201 ± 0.01

6.431 ± 0.017

4.22 ± 0.01

6.715 ± 0.02

2.439 ± 0.007

5.394 ± 0.012

5.779 ± 0.015

9.955 ± 0.021

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.517 ± 0.006

4.29 ± 0.009

5.057 ± 0.017

3.626 ± 0.012

5.515 ± 0.018

8.996 ± 0.016

4.846 ± 0.009

6.366 ± 0.012

1.33 ± 0.005

2.716 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski