Scandinavium goeteborgense

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4446 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R6DP91|A0A4R6DP91_9ENTR Outer membrane autotransporter protein OS=Scandinavium goeteborgense OX=1851514 GN=EC847_1401 PE=4 SV=1
MM1 pKa = 7.27RR2 pKa = 11.84TMVQDD7 pKa = 3.75EE8 pKa = 4.6LCDD11 pKa = 3.82YY12 pKa = 11.12DD13 pKa = 5.4IDD15 pKa = 5.16DD16 pKa = 4.94EE17 pKa = 5.19IYY19 pKa = 10.72FNKK22 pKa = 10.16EE23 pKa = 3.65DD24 pKa = 4.82LKK26 pKa = 11.52DD27 pKa = 3.96GDD29 pKa = 4.41DD30 pKa = 4.32SYY32 pKa = 12.07LGAQDD37 pKa = 3.98QNGDD41 pKa = 3.39NTGTIHH47 pKa = 6.53ICWSSLIFMRR57 pKa = 11.84IGVV60 pKa = 3.69

Molecular weight: 6.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R6EMU1|A0A4R6EMU1_9ENTR Ditrans polycis-undecaprenyl-diphosphate synthase ((2E 6E)-farnesyl-diphosphate specific) OS=Scandinavium goeteborgense OX=1851514 GN=uppS PE=3 SV=1
MM1 pKa = 8.0RR2 pKa = 11.84ISCHH6 pKa = 5.74NRR8 pKa = 11.84VLLLLVLIALAAAALPFVNYY28 pKa = 10.31APNRR32 pKa = 11.84LVSGEE37 pKa = 4.34SRR39 pKa = 11.84QLWQIWTFPPALLLIVPLVFVGLSLLRR66 pKa = 11.84GRR68 pKa = 11.84GALALTLVLAQVLFILLLWSGGKK91 pKa = 9.65AATTLAQSGSPLARR105 pKa = 11.84TSPGSGLWLWLAVALLICSEE125 pKa = 4.71AIRR128 pKa = 11.84RR129 pKa = 11.84LTQKK133 pKa = 10.79SLWRR137 pKa = 11.84WLLNAQIWIIPVALLLSGEE156 pKa = 4.4LDD158 pKa = 3.4SLSLMKK164 pKa = 10.4EE165 pKa = 3.8YY166 pKa = 10.71FNRR169 pKa = 11.84QDD171 pKa = 3.39VFDD174 pKa = 4.5SALQQHH180 pKa = 7.37LILLFGTLLPGLLIGVPLGLWCWRR204 pKa = 11.84HH205 pKa = 5.22QGRR208 pKa = 11.84QTRR211 pKa = 11.84VFTVLNIIQTIPSVALFGLLIAPLAGLVKK240 pKa = 10.39HH241 pKa = 6.22FPWLSAWGIGGTGLTPALIALVLYY265 pKa = 10.73ALLPLVRR272 pKa = 11.84GVVAGMQQVAADD284 pKa = 3.91VLEE287 pKa = 4.64SASAMGMSQTQRR299 pKa = 11.84FWKK302 pKa = 9.96VQLPLALPVLLRR314 pKa = 11.84SLRR317 pKa = 11.84VVTVQTVGMAVVAALIGAGGFGALVFQGLLSSALDD352 pKa = 3.67LVLLGVIPVIAMAVVVDD369 pKa = 4.44ALFSLWIALLGGEE382 pKa = 4.37AHH384 pKa = 7.38DD385 pKa = 4.16

Molecular weight: 41.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4446

0

4446

1402276

29

3856

315.4

34.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.73 ± 0.041

1.006 ± 0.012

5.362 ± 0.033

5.542 ± 0.036

3.842 ± 0.025

7.497 ± 0.037

2.281 ± 0.017

5.613 ± 0.03

4.22 ± 0.031

10.772 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.836 ± 0.019

3.816 ± 0.03

4.432 ± 0.026

4.529 ± 0.03

5.491 ± 0.037

6.074 ± 0.033

5.535 ± 0.038

7.174 ± 0.03

1.526 ± 0.018

2.724 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski