Panacibacter ginsenosidivorans

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Panacibacter

Average proteome isoelectric point is 6.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4562 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5B8VF29|A0A5B8VF29_9BACT Glycosyltransferase family 4 protein OS=Panacibacter ginsenosidivorans OX=1813871 GN=FRZ67_09595 PE=4 SV=1
MM1 pKa = 7.88PIIAFDD7 pKa = 3.59TASAPLEE14 pKa = 4.8DD15 pKa = 4.63IEE17 pKa = 4.63TDD19 pKa = 3.43VLTAEE24 pKa = 4.03QFPYY28 pKa = 11.14NLIVWNDD35 pKa = 3.59DD36 pKa = 3.12VNTFDD41 pKa = 4.14WVIEE45 pKa = 4.05TLMEE49 pKa = 4.3VCNHH53 pKa = 5.56TEE55 pKa = 3.89EE56 pKa = 4.51QAEE59 pKa = 4.05QCSIIIHH66 pKa = 5.63YY67 pKa = 9.76KK68 pKa = 9.88GKK70 pKa = 10.3CAVKK74 pKa = 10.68NGDD77 pKa = 3.76YY78 pKa = 8.67DD79 pKa = 3.99TLKK82 pKa = 10.57PMCDD86 pKa = 3.77AITEE90 pKa = 4.23RR91 pKa = 11.84NIGATIEE98 pKa = 4.13MMVGSS103 pKa = 4.42

Molecular weight: 11.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5B8VAN3|A0A5B8VAN3_9BACT Uncharacterized protein OS=Panacibacter ginsenosidivorans OX=1813871 GN=FRZ67_12180 PE=4 SV=1
MM1 pKa = 7.66NEE3 pKa = 3.62FLLIILAYY11 pKa = 10.34LIGSIPTAVWVSKK24 pKa = 10.6RR25 pKa = 11.84FFGIDD30 pKa = 2.76IRR32 pKa = 11.84DD33 pKa = 3.83YY34 pKa = 11.36GSGNAGATNTFRR46 pKa = 11.84VLGSKK51 pKa = 9.23WGTIVMIVDD60 pKa = 3.58MAKK63 pKa = 10.67GIAAALLCFLLPYY76 pKa = 9.27YY77 pKa = 11.23ANINNEE83 pKa = 3.75WDD85 pKa = 3.69RR86 pKa = 11.84TNLMIGLGLAAVIGHH101 pKa = 7.28IFPIWAGFRR110 pKa = 11.84GGKK113 pKa = 9.5GVATLFGMIVAIQPLVAVCCVGVFLLVLYY142 pKa = 7.36LTRR145 pKa = 11.84FVSLSSILAGISFAIFILFIFNDD168 pKa = 3.87DD169 pKa = 3.23VTLYY173 pKa = 10.52RR174 pKa = 11.84IFSVAVALLVILTHH188 pKa = 5.81QKK190 pKa = 10.43NINRR194 pKa = 11.84ILNGTEE200 pKa = 3.84SKK202 pKa = 11.23VPILKK207 pKa = 10.11HH208 pKa = 5.82RR209 pKa = 11.84DD210 pKa = 2.81RR211 pKa = 11.84RR212 pKa = 11.84RR213 pKa = 11.84QRR215 pKa = 11.84RR216 pKa = 11.84RR217 pKa = 11.84NRR219 pKa = 3.14

Molecular weight: 24.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4562

0

4562

1552168

22

2408

340.2

38.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.486 ± 0.031

0.96 ± 0.012

5.45 ± 0.03

5.53 ± 0.041

5.028 ± 0.026

6.583 ± 0.038

1.952 ± 0.017

7.648 ± 0.036

7.325 ± 0.036

9.033 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.443 ± 0.018

5.852 ± 0.038

3.691 ± 0.021

3.637 ± 0.021

3.503 ± 0.023

6.205 ± 0.031

5.968 ± 0.043

6.249 ± 0.027

1.257 ± 0.015

4.2 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski