Hymenobacter chitinivorans DSM 11115

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter; Hymenobacter chitinivorans

Average proteome isoelectric point is 6.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4905 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2M9BQ01|A0A2M9BQ01_9BACT Putative alpha-1 2-mannosidase OS=Hymenobacter chitinivorans DSM 11115 OX=1121954 GN=CLV45_1450 PE=4 SV=1
MM1 pKa = 7.38AQQAQLQNEE10 pKa = 4.47AARR13 pKa = 11.84QYY15 pKa = 11.52SFLAEE20 pKa = 4.51MYY22 pKa = 9.98QDD24 pKa = 4.34SYY26 pKa = 11.71FPNNLVDD33 pKa = 3.38KK34 pKa = 10.51GKK36 pKa = 10.68AILVQLCFDD45 pKa = 5.21IEE47 pKa = 4.24QQQPKK52 pKa = 10.27SLEE55 pKa = 3.6EE56 pKa = 4.37LYY58 pKa = 11.09ALTHH62 pKa = 6.79AATDD66 pKa = 3.51QFNDD70 pKa = 3.57LQEE73 pKa = 4.3EE74 pKa = 4.79FYY76 pKa = 10.94EE77 pKa = 4.56ADD79 pKa = 3.78SEE81 pKa = 4.49IEE83 pKa = 3.9TAARR87 pKa = 11.84DD88 pKa = 4.07CIGTDD93 pKa = 3.6FDD95 pKa = 5.18FVATAYY101 pKa = 10.4GFEE104 pKa = 4.14ADD106 pKa = 3.82IEE108 pKa = 4.21EE109 pKa = 5.45LIATRR114 pKa = 11.84DD115 pKa = 3.11WW116 pKa = 3.68

Molecular weight: 13.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2M9BA65|A0A2M9BA65_9BACT Peptide/nickel transport system permease protein OS=Hymenobacter chitinivorans DSM 11115 OX=1121954 GN=CLV45_3179 PE=3 SV=1
MM1 pKa = 7.66KK2 pKa = 10.28NINWPRR8 pKa = 11.84VLIGLLFLLLLAALAKK24 pKa = 10.69NLVGGLNRR32 pKa = 11.84RR33 pKa = 11.84KK34 pKa = 10.09HH35 pKa = 5.57MSPATQNRR43 pKa = 3.56

Molecular weight: 4.85 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4905

0

4905

1690591

29

2528

344.7

37.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.484 ± 0.047

0.711 ± 0.011

4.833 ± 0.026

5.235 ± 0.034

4.083 ± 0.021

7.651 ± 0.037

2.014 ± 0.02

4.295 ± 0.025

3.997 ± 0.038

10.988 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.788 ± 0.015

3.774 ± 0.033

5.254 ± 0.027

4.827 ± 0.03

5.988 ± 0.035

5.647 ± 0.033

6.458 ± 0.047

7.149 ± 0.028

1.276 ± 0.015

3.548 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski