Corynebacterium testudinoris

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae;

Average proteome isoelectric point is 5.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2543 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0G3HF05|A0A0G3HF05_9CORY DNA-binding protein excisionase family OS=Corynebacterium testudinoris OX=136857 GN=CTEST_11500 PE=4 SV=1
MM1 pKa = 7.58ARR3 pKa = 11.84TGSPIWIDD11 pKa = 4.16LGTHH15 pKa = 7.16DD16 pKa = 4.78IDD18 pKa = 4.77GSVSFYY24 pKa = 10.96SQVFGWDD31 pKa = 3.47VPEE34 pKa = 4.6GAAEE38 pKa = 3.94FGGYY42 pKa = 10.15RR43 pKa = 11.84IATKK47 pKa = 10.64NGVPVGGMMSSLMGPDD63 pKa = 3.83GPLEE67 pKa = 4.13EE68 pKa = 5.07PEE70 pKa = 4.98YY71 pKa = 8.26PTAWTVYY78 pKa = 10.35LAVEE82 pKa = 4.32DD83 pKa = 4.19CAAAVAAAEE92 pKa = 4.33KK93 pKa = 10.62AGATVVVPAMEE104 pKa = 4.2VGEE107 pKa = 4.55LGSMAILFDD116 pKa = 3.85PAGAGVGFWEE126 pKa = 4.43AKK128 pKa = 9.43EE129 pKa = 4.07FPGLAFNGQPGTPVWFEE146 pKa = 3.75QMSKK150 pKa = 10.86DD151 pKa = 3.6FQAAADD157 pKa = 5.01FYY159 pKa = 11.54QEE161 pKa = 3.85ALGWNLAYY169 pKa = 9.98MGEE172 pKa = 4.5DD173 pKa = 3.62GQPVDD178 pKa = 4.52SPPTSGIRR186 pKa = 11.84YY187 pKa = 5.9ATNGAGEE194 pKa = 4.16EE195 pKa = 4.16ASAGLCEE202 pKa = 4.87ADD204 pKa = 3.18SFLPAEE210 pKa = 4.47VPSYY214 pKa = 7.79WRR216 pKa = 11.84AYY218 pKa = 9.72IGVSDD223 pKa = 4.35TDD225 pKa = 3.14ATAAQIVEE233 pKa = 4.3LGGAVLDD240 pKa = 4.8GPMDD244 pKa = 3.86SPFGRR249 pKa = 11.84VATVADD255 pKa = 3.97PQGGTFQIVSVEE267 pKa = 4.05GG268 pKa = 3.38

Molecular weight: 27.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0G3H5Q1|A0A0G3H5Q1_9CORY Sphingosine/diacylglycerol kinase-like enzyme OS=Corynebacterium testudinoris OX=136857 GN=CTEST_06335 PE=4 SV=1
MM1 pKa = 7.41TISPARR7 pKa = 11.84LIALTLTWATIWSGAFVAMKK27 pKa = 10.16VASQSAGAFAIVGIRR42 pKa = 11.84CTIAGAIMIAAAWGARR58 pKa = 11.84KK59 pKa = 9.64ALTRR63 pKa = 11.84SGVKK67 pKa = 8.61GTIVIGILNNLGYY80 pKa = 10.48LGLMASAMPYY90 pKa = 10.1VSAGMAAIITALTPLAVLVISALRR114 pKa = 11.84GRR116 pKa = 11.84ALLITQWIGCVVGFLGVVGSAWTRR140 pKa = 11.84LDD142 pKa = 3.34SGEE145 pKa = 4.24TQWRR149 pKa = 11.84GILFALGAVACLVAGTVLTPKK170 pKa = 10.06LVPPGSPWLSTGIQSLAAGIPALGLSLLFEE200 pKa = 4.57DD201 pKa = 5.01TPTFSTPFIVAEE213 pKa = 4.46AYY215 pKa = 10.53LILGASVLGMTMWLQLIRR233 pKa = 11.84EE234 pKa = 4.74AGPDD238 pKa = 3.25RR239 pKa = 11.84AAVAHH244 pKa = 6.6FLPPLISIALGALILGEE261 pKa = 4.24AVSPLALAMCIPVAIGVALATRR283 pKa = 11.84RR284 pKa = 11.84PRR286 pKa = 11.84KK287 pKa = 9.21PRR289 pKa = 11.84QLL291 pKa = 3.42

Molecular weight: 29.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2543

0

2543

818509

39

3015

321.9

34.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.736 ± 0.056

0.629 ± 0.013

6.15 ± 0.042

6.004 ± 0.053

3.304 ± 0.03

8.489 ± 0.044

2.157 ± 0.024

5.175 ± 0.035

2.576 ± 0.033

10.108 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.227 ± 0.018

2.598 ± 0.027

5.193 ± 0.03

3.114 ± 0.03

6.444 ± 0.041

5.886 ± 0.031

6.192 ± 0.034

8.417 ± 0.05

1.462 ± 0.021

2.138 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski