Atta colombica

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; At

Average proteome isoelectric point is 7.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 14143 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A195BD99|A0A195BD99_9HYME Tau-tubulin kinase 1 OS=Atta colombica OX=520822 GN=ALC53_07422 PE=4 SV=1
MM1 pKa = 7.16FCKK4 pKa = 10.33IKK6 pKa = 9.89TKK8 pKa = 10.15RR9 pKa = 11.84PRR11 pKa = 11.84SAEE14 pKa = 4.02VAFEE18 pKa = 3.87EE19 pKa = 4.71ANRR22 pKa = 11.84SIDD25 pKa = 3.64PVDD28 pKa = 3.77GKK30 pKa = 10.79NSGSVDD36 pKa = 3.54DD37 pKa = 5.29AFLKK41 pKa = 10.64ARR43 pKa = 11.84EE44 pKa = 4.13TRR46 pKa = 11.84GSIDD50 pKa = 3.08CAYY53 pKa = 10.46ALEE56 pKa = 4.39RR57 pKa = 11.84FMRR60 pKa = 11.84EE61 pKa = 4.2YY62 pKa = 11.02YY63 pKa = 10.38SVPGSLMIIEE73 pKa = 4.88NYY75 pKa = 7.84YY76 pKa = 10.7HH77 pKa = 7.54CDD79 pKa = 3.43DD80 pKa = 6.11DD81 pKa = 4.62EE82 pKa = 7.27DD83 pKa = 4.71NDD85 pKa = 5.09EE86 pKa = 5.2EE87 pKa = 6.78DD88 pKa = 5.99DD89 pKa = 6.09DD90 pKa = 7.44DD91 pKa = 7.59DD92 pKa = 7.59DD93 pKa = 6.9DD94 pKa = 6.78FDD96 pKa = 6.76DD97 pKa = 5.55DD98 pKa = 4.46YY99 pKa = 11.87YY100 pKa = 11.7YY101 pKa = 11.36YY102 pKa = 10.7YY103 pKa = 11.15DD104 pKa = 4.2NIINII109 pKa = 4.11

Molecular weight: 12.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A195BCH2|A0A195BCH2_9HYME Uncharacterized protein OS=Atta colombica OX=520822 GN=ALC53_07686 PE=4 SV=1
MM1 pKa = 7.2VSCSSSQPWKK11 pKa = 10.72VIEE14 pKa = 4.58KK15 pKa = 10.3LDD17 pKa = 3.53IFISRR22 pKa = 11.84LRR24 pKa = 11.84GCEE27 pKa = 3.35ASEE30 pKa = 4.07PVHH33 pKa = 5.97EE34 pKa = 4.6RR35 pKa = 11.84ASAFNLASSSNFRR48 pKa = 11.84HH49 pKa = 5.57NASVNIFIAYY59 pKa = 8.55LARR62 pKa = 11.84PEE64 pKa = 3.97WAGSNNKK71 pKa = 9.11LLCLTFSANSCAVGAILHH89 pKa = 6.15ARR91 pKa = 11.84ALLLAVLSCLLIIALRR107 pKa = 11.84FLAGLPRR114 pKa = 11.84LRR116 pKa = 11.84SLLLLLLLFLLRR128 pKa = 11.84VGWHH132 pKa = 6.33CLSPGIYY139 pKa = 9.22QRR141 pKa = 11.84LRR143 pKa = 11.84LRR145 pKa = 11.84YY146 pKa = 7.75PWRR149 pKa = 11.84EE150 pKa = 3.38EE151 pKa = 4.15SQRR154 pKa = 11.84SAHH157 pKa = 6.05GVFARR162 pKa = 11.84YY163 pKa = 8.92VRR165 pKa = 11.84HH166 pKa = 6.58RR167 pKa = 11.84LGTCVIRR174 pKa = 11.84KK175 pKa = 9.19GKK177 pKa = 9.82ILWEE181 pKa = 4.22RR182 pKa = 11.84KK183 pKa = 9.04RR184 pKa = 11.84EE185 pKa = 4.09LTYY188 pKa = 11.07GVASLIKK195 pKa = 10.47SRR197 pKa = 11.84NDD199 pKa = 3.23CDD201 pKa = 3.91AKK203 pKa = 11.13

Molecular weight: 22.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14143

0

14143

6716947

18

20976

474.9

53.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.979 ± 0.02

2.055 ± 0.028

5.333 ± 0.02

6.619 ± 0.034

3.658 ± 0.019

5.223 ± 0.027

2.553 ± 0.012

6.272 ± 0.024

6.375 ± 0.031

9.008 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.333 ± 0.01

5.2 ± 0.021

4.85 ± 0.028

4.167 ± 0.02

5.947 ± 0.024

8.249 ± 0.027

6.029 ± 0.018

5.838 ± 0.014

1.073 ± 0.008

3.198 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski