Nocardia arthritidis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Nocardiaceae; Nocardia

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8970 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6G9YR97|A0A6G9YR97_9NOCA Transposase OS=Nocardia arthritidis OX=228602 GN=F5544_39045 PE=4 SV=1
MM1 pKa = 7.61EE2 pKa = 5.5NNLPALDD9 pKa = 3.82INALEE14 pKa = 4.14ISEE17 pKa = 4.62FLDD20 pKa = 4.06DD21 pKa = 5.35SRR23 pKa = 11.84MDD25 pKa = 3.84DD26 pKa = 3.4RR27 pKa = 11.84DD28 pKa = 3.61VVAKK32 pKa = 10.57VMSASCTTCEE42 pKa = 4.57CSCSCSSS49 pKa = 3.61

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6G9Y4E1|A0A6G9Y4E1_9NOCA CBS domain-containing protein OS=Nocardia arthritidis OX=228602 GN=F5544_00155 PE=4 SV=1
MM1 pKa = 7.07LTVAKK6 pKa = 10.12GKK8 pKa = 8.71RR9 pKa = 11.84TFQPNNRR16 pKa = 11.84RR17 pKa = 11.84RR18 pKa = 11.84ARR20 pKa = 11.84VHH22 pKa = 5.99GFRR25 pKa = 11.84LRR27 pKa = 11.84MRR29 pKa = 11.84TRR31 pKa = 11.84AGRR34 pKa = 11.84AIVSARR40 pKa = 11.84RR41 pKa = 11.84RR42 pKa = 11.84KK43 pKa = 10.17GRR45 pKa = 11.84GTLTAA50 pKa = 4.78

Molecular weight: 5.79 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8970

0

8970

3023542

29

14483

337.1

36.26

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.325 ± 0.041

0.841 ± 0.008

6.107 ± 0.02

5.213 ± 0.026

2.988 ± 0.015

8.875 ± 0.024

2.237 ± 0.013

4.321 ± 0.017

1.94 ± 0.019

10.034 ± 0.031

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.872 ± 0.01

2.137 ± 0.013

6.062 ± 0.024

2.84 ± 0.016

8.118 ± 0.026

5.167 ± 0.017

6.094 ± 0.02

8.187 ± 0.028

1.504 ± 0.01

2.139 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski