Pseudoalteromonas phage C7

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 73 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A411CVU7|A0A411CVU7_9CAUD Uncharacterized protein OS=Pseudoalteromonas phage C7 OX=2510494 PE=4 SV=1
MM1 pKa = 7.98PLTITPALIQTIYY14 pKa = 10.93ANSYY18 pKa = 11.52DD19 pKa = 4.3DD20 pKa = 4.04ATLQALIDD28 pKa = 4.55DD29 pKa = 4.52YY30 pKa = 11.33EE31 pKa = 5.07SKK33 pKa = 10.51IGEE36 pKa = 4.39CLSASVGDD44 pKa = 3.9AVGGLVLANYY54 pKa = 9.29IAYY57 pKa = 8.56TIYY60 pKa = 11.03DD61 pKa = 3.4PTLTVKK67 pKa = 10.33SEE69 pKa = 3.87KK70 pKa = 10.67GSFGDD75 pKa = 3.96SVTYY79 pKa = 10.47QDD81 pKa = 3.36NTMGADD87 pKa = 3.33AYY89 pKa = 10.55LQRR92 pKa = 11.84AQKK95 pKa = 9.82MDD97 pKa = 3.62TNNCLLSLQNTSFGLMTLGQRR118 pKa = 11.84SS119 pKa = 3.29

Molecular weight: 12.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A411CW28|A0A411CW28_9CAUD Uncharacterized protein OS=Pseudoalteromonas phage C7 OX=2510494 PE=4 SV=1
MM1 pKa = 6.2VTSIEE6 pKa = 4.03RR7 pKa = 11.84QFIIDD12 pKa = 3.86NPHH15 pKa = 6.38LKK17 pKa = 10.72SNAIQKK23 pKa = 10.4FIDD26 pKa = 3.47VSITHH31 pKa = 7.02INRR34 pKa = 11.84IKK36 pKa = 10.68QEE38 pKa = 3.71AHH40 pKa = 6.47GKK42 pKa = 9.5IKK44 pKa = 10.06WFHH47 pKa = 6.71KK48 pKa = 9.41GNKK51 pKa = 8.86YY52 pKa = 10.23PYY54 pKa = 9.93LNKK57 pKa = 10.58GEE59 pKa = 3.9NGYY62 pKa = 10.25RR63 pKa = 11.84IRR65 pKa = 11.84YY66 pKa = 8.24AGNLILRR73 pKa = 11.84TRR75 pKa = 11.84NPNTAFYY82 pKa = 10.47VIDD85 pKa = 3.51IMISGIEE92 pKa = 3.75QGYY95 pKa = 10.15FDD97 pKa = 5.24GDD99 pKa = 4.29RR100 pKa = 11.84IPKK103 pKa = 8.86PKK105 pKa = 10.47KK106 pKa = 8.02FTRR109 pKa = 11.84LSFEE113 pKa = 4.97LPSLMQIARR122 pKa = 11.84KK123 pKa = 9.77SDD125 pKa = 3.51FKK127 pKa = 10.66EE128 pKa = 3.78TARR131 pKa = 11.84TYY133 pKa = 10.75KK134 pKa = 10.7

Molecular weight: 15.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

73

0

73

12731

29

837

174.4

19.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.965 ± 0.522

1.304 ± 0.154

6.19 ± 0.236

6.747 ± 0.228

4.045 ± 0.211

6.527 ± 0.203

1.626 ± 0.199

6.488 ± 0.211

7.258 ± 0.37

7.666 ± 0.258

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.781 ± 0.172

5.71 ± 0.23

3.495 ± 0.232

3.574 ± 0.226

4.163 ± 0.185

6.575 ± 0.205

6.315 ± 0.409

6.441 ± 0.233

1.249 ± 0.153

3.88 ± 0.219
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski