Natranaerovirga hydrolytica

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Eubacteriales incertae sedis; Natranaerovirga

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2725 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R1N0X1|A0A4R1N0X1_9FIRM Multicomponent Na+:H+ antiporter subunit C OS=Natranaerovirga hydrolytica OX=680378 GN=EDC19_1011 PE=3 SV=1
MM1 pKa = 7.58SFNDD5 pKa = 4.67LIVNGGFEE13 pKa = 4.44TGSFPPWVSFNANITSQFSHH33 pKa = 6.43SGSFSANLAGGTVNAFLYY51 pKa = 10.37QLVPINEE58 pKa = 4.14GNRR61 pKa = 11.84FEE63 pKa = 5.14FKK65 pKa = 10.89VSLSKK70 pKa = 11.19VGTQPSPPISLSIAYY85 pKa = 9.84YY86 pKa = 10.3DD87 pKa = 4.22ANFTLLSSGLITNIPSNRR105 pKa = 11.84VTSINGLDD113 pKa = 3.34WLVIYY118 pKa = 7.72QTTDD122 pKa = 3.43LAPMGSTQALVFIQKK137 pKa = 10.08SSEE140 pKa = 4.11AGSSPILVDD149 pKa = 5.5DD150 pKa = 4.42ISLLEE155 pKa = 4.22IEE157 pKa = 4.85SAGATGPTGPTGATGATGATGATGTTGATGATGATGATGDD197 pKa = 3.92TGATGATGATGDD209 pKa = 3.92TGATGATGATGDD221 pKa = 3.92TGATGATGTTGATGATGATGATGDD245 pKa = 3.81TGATGDD251 pKa = 3.89TGATGATGATGDD263 pKa = 3.81TGATGDD269 pKa = 3.78TGATGDD275 pKa = 3.78TGATGDD281 pKa = 3.89TGATGATGATGATGATGATGATGDD305 pKa = 3.92TGATGATGATGDD317 pKa = 3.81TGATGDD323 pKa = 3.78TGATGDD329 pKa = 3.89TGATGATGPTGIEE342 pKa = 4.04GLSDD346 pKa = 3.22YY347 pKa = 11.25AYY349 pKa = 9.76IYY351 pKa = 11.0NLDD354 pKa = 3.81PQVVALEE361 pKa = 4.03ADD363 pKa = 3.22ITFSNNGVIVGAITHH378 pKa = 6.12TPGTATITLGTAGDD392 pKa = 3.8YY393 pKa = 11.05SIVFNVTGVEE403 pKa = 4.12ANQFTLFQNGTAVPGATYY421 pKa = 10.62GSGAGTQANPGFVTITAAAGDD442 pKa = 4.09TLTLRR447 pKa = 11.84NHH449 pKa = 6.47SSSAAITLQTLAGGTQTNSNASIQIQKK476 pKa = 10.28INN478 pKa = 3.23

Molecular weight: 45.54 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R1M6T5|A0A4R1M6T5_9FIRM RDD family protein OS=Natranaerovirga hydrolytica OX=680378 GN=EDC19_2633 PE=4 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.67QPKK8 pKa = 9.29KK9 pKa = 8.47RR10 pKa = 11.84QRR12 pKa = 11.84QKK14 pKa = 9.41EE15 pKa = 3.76HH16 pKa = 6.21GFRR19 pKa = 11.84KK20 pKa = 9.96RR21 pKa = 11.84MRR23 pKa = 11.84TRR25 pKa = 11.84SGRR28 pKa = 11.84NILARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.99KK41 pKa = 10.61LSAA44 pKa = 4.03

Molecular weight: 5.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2725

0

2725

858221

29

3274

314.9

35.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.633 ± 0.048

0.89 ± 0.02

5.526 ± 0.045

7.765 ± 0.061

4.25 ± 0.041

6.259 ± 0.052

1.771 ± 0.019

9.72 ± 0.053

7.765 ± 0.072

9.351 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.716 ± 0.021

5.834 ± 0.043

2.987 ± 0.032

3.288 ± 0.029

3.413 ± 0.03

5.906 ± 0.037

5.382 ± 0.042

6.551 ± 0.041

0.728 ± 0.014

4.265 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski