Labedella phragmitis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Labedella

Average proteome isoelectric point is 5.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3187 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3S3ZHZ2|A0A3S3ZHZ2_9MICO GNAT family N-acetyltransferase OS=Labedella phragmitis OX=2498849 GN=ELQ90_13645 PE=4 SV=1
MM1 pKa = 7.1TRR3 pKa = 11.84HH4 pKa = 5.48HH5 pKa = 7.22RR6 pKa = 11.84NRR8 pKa = 11.84LTATLAAATASLLVLAGCAGGAGSTGAAPDD38 pKa = 3.7ANAEE42 pKa = 4.29IIVGSQNEE50 pKa = 4.44PTNLDD55 pKa = 3.56QIFGGSSGVTEE66 pKa = 4.12VFTGNVYY73 pKa = 10.69EE74 pKa = 4.21GLFRR78 pKa = 11.84ITDD81 pKa = 3.73DD82 pKa = 4.8AEE84 pKa = 4.27VEE86 pKa = 4.08PLLAAEE92 pKa = 4.68TEE94 pKa = 4.21VSEE97 pKa = 6.06DD98 pKa = 2.95GLTYY102 pKa = 10.72TFTLQDD108 pKa = 3.3ATFHH112 pKa = 6.35SGAPLTAEE120 pKa = 3.75AVKK123 pKa = 10.85YY124 pKa = 10.26SLEE127 pKa = 3.97RR128 pKa = 11.84FIGEE132 pKa = 3.63EE133 pKa = 3.86SIAARR138 pKa = 11.84KK139 pKa = 8.85SQLSVIDD146 pKa = 3.63TVTAVDD152 pKa = 3.96DD153 pKa = 3.81KK154 pKa = 10.83TVEE157 pKa = 4.13VTLSSKK163 pKa = 10.83SISFTYY169 pKa = 10.02NLGYY173 pKa = 10.4VWIVNPEE180 pKa = 4.11AGDD183 pKa = 3.45LTAAADD189 pKa = 3.82GTGPYY194 pKa = 10.49SLGDD198 pKa = 3.57YY199 pKa = 10.5RR200 pKa = 11.84KK201 pKa = 9.9GDD203 pKa = 4.01SITLEE208 pKa = 4.02VNDD211 pKa = 5.51DD212 pKa = 3.62YY213 pKa = 11.6WGDD216 pKa = 3.49APANGGVVYY225 pKa = 10.11QYY227 pKa = 11.22YY228 pKa = 11.08ADD230 pKa = 3.7PTALNNALVTGAVDD244 pKa = 4.82LVTSQSNPDD253 pKa = 3.23SLAEE257 pKa = 4.12FEE259 pKa = 4.48SGDD262 pKa = 3.61YY263 pKa = 10.69EE264 pKa = 4.57IIEE267 pKa = 4.45GTSTTKK273 pKa = 10.62EE274 pKa = 3.52LLAFNDD280 pKa = 3.51RR281 pKa = 11.84VAPFDD286 pKa = 3.85DD287 pKa = 3.85VNVRR291 pKa = 11.84KK292 pKa = 9.48AVYY295 pKa = 9.83SAIDD299 pKa = 3.45RR300 pKa = 11.84EE301 pKa = 4.17QLLDD305 pKa = 4.88AIWDD309 pKa = 3.71GRR311 pKa = 11.84GQLIGSMVPPSEE323 pKa = 3.77PWYY326 pKa = 11.0LDD328 pKa = 3.57LADD331 pKa = 4.62NNPYY335 pKa = 10.66DD336 pKa = 4.35PEE338 pKa = 5.05LSADD342 pKa = 3.91LLADD346 pKa = 3.9AGYY349 pKa = 11.41ADD351 pKa = 4.58GFSFTIDD358 pKa = 3.43TPDD361 pKa = 3.39SGVHH365 pKa = 4.16STVAEE370 pKa = 4.23FLQTEE375 pKa = 4.35LAKK378 pKa = 11.04VGVTVDD384 pKa = 3.22INIITDD390 pKa = 3.59DD391 pKa = 3.08EE392 pKa = 4.66WYY394 pKa = 9.77EE395 pKa = 4.36KK396 pKa = 10.96VYY398 pKa = 10.54TDD400 pKa = 4.27HH401 pKa = 7.53DD402 pKa = 4.28FEE404 pKa = 4.72ATLQGHH410 pKa = 5.63VNDD413 pKa = 4.96RR414 pKa = 11.84DD415 pKa = 3.37INFYY419 pKa = 11.17GNPDD423 pKa = 4.29FYY425 pKa = 10.64WGYY428 pKa = 11.34DD429 pKa = 3.48DD430 pKa = 6.71AEE432 pKa = 4.43VQGWLAEE439 pKa = 4.06AEE441 pKa = 4.34QADD444 pKa = 4.06STEE447 pKa = 4.06QQTEE451 pKa = 4.68LITQVNQKK459 pKa = 9.86ISDD462 pKa = 3.87DD463 pKa = 3.84AASVWLYY470 pKa = 10.76LNPQLRR476 pKa = 11.84IVRR479 pKa = 11.84DD480 pKa = 4.5GITGVPEE487 pKa = 3.93NGLNSLFYY495 pKa = 11.03VYY497 pKa = 10.23DD498 pKa = 3.43IQEE501 pKa = 3.75AA502 pKa = 3.49

Molecular weight: 54.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A444PUM2|A0A444PUM2_9MICO DUF664 domain-containing protein OS=Labedella phragmitis OX=2498849 GN=ELQ90_05520 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3187

0

3187

1053170

32

3093

330.5

35.26

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.974 ± 0.056

0.459 ± 0.01

6.523 ± 0.045

5.792 ± 0.046

3.169 ± 0.028

9.033 ± 0.036

1.876 ± 0.021

4.48 ± 0.031

1.757 ± 0.029

9.816 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.645 ± 0.019

1.918 ± 0.025

5.381 ± 0.027

2.378 ± 0.026

7.334 ± 0.058

6.276 ± 0.034

6.349 ± 0.05

9.486 ± 0.042

1.411 ± 0.016

1.942 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski