Candidatus Finniella inopinata

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Holosporales; Candidatus Paracaedibacteraceae; Candidatus Finniella

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1538 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q7DLE7|A0A4Q7DLE7_9PROT Uncharacterized protein OS=Candidatus Finniella inopinata OX=1696036 GN=EQU50_00365 PE=4 SV=1
MM1 pKa = 7.4GVQTISTAPISCCMGTAPATLTALPISFDD30 pKa = 3.32LTMVMPAATINDD42 pKa = 4.2HH43 pKa = 7.31LPFLNILPFGMCITLGNPLVAAATAAALGILVPLPCLPMTMAPWAPGAPTVQLGGQPALNDD104 pKa = 3.79SSVLTCMWGAAIAIGSPGQPLTMIPP129 pKa = 3.52

Molecular weight: 12.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V2E005|A0A4V2E005_9PROT Uncharacterized protein OS=Candidatus Finniella inopinata OX=1696036 GN=EQU50_01245 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.38RR3 pKa = 11.84TYY5 pKa = 10.3QPSQLVRR12 pKa = 11.84KK13 pKa = 9.03RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATVGGRR28 pKa = 11.84RR29 pKa = 11.84VIAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.55GRR39 pKa = 11.84TKK41 pKa = 10.86LSAA44 pKa = 3.61

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1538

0

1538

501607

28

2064

326.1

36.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.03 ± 0.068

1.153 ± 0.023

5.211 ± 0.045

5.5 ± 0.068

4.472 ± 0.045

6.743 ± 0.061

2.381 ± 0.028

6.343 ± 0.05

6.055 ± 0.064

10.62 ± 0.079

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.248 ± 0.029

4.116 ± 0.043

4.55 ± 0.043

4.597 ± 0.049

4.659 ± 0.051

6.865 ± 0.065

5.817 ± 0.058

6.311 ± 0.044

1.215 ± 0.023

3.115 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski