Natrialba asiatica (strain ATCC 700177 / DSM 12278 / JCM 9576 / FERM P-10747 / NBRC 102637 / 172P1)

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrialba; Natrialba asiatica

Average proteome isoelectric point is 4.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4175 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M0B519|M0B519_NATA1 Uncharacterized protein OS=Natrialba asiatica (strain ATCC 700177 / DSM 12278 / JCM 9576 / FERM P-10747 / NBRC 102637 / 172P1) OX=29540 GN=C481_00200 PE=4 SV=1
MM1 pKa = 7.64IYY3 pKa = 10.66AVTADD8 pKa = 3.35TGEE11 pKa = 4.02EE12 pKa = 3.44RR13 pKa = 11.84WRR15 pKa = 11.84FEE17 pKa = 3.71TNDD20 pKa = 3.41AVRR23 pKa = 11.84STPAVVDD30 pKa = 3.47GTLYY34 pKa = 11.0VGLHH38 pKa = 6.09DD39 pKa = 5.71QMLALDD45 pKa = 4.28AASGSEE51 pKa = 3.74QWRR54 pKa = 11.84VDD56 pKa = 3.62VAPGGSNPTVVQGEE70 pKa = 4.42SVYY73 pKa = 10.91VCRR76 pKa = 11.84QGAAFGIGGIAKK88 pKa = 9.79LDD90 pKa = 3.7SSNGDD95 pKa = 3.55VQSKK99 pKa = 9.44FATDD103 pKa = 3.31TTGGLTAAAVGDD115 pKa = 3.47QTVYY119 pKa = 10.67VGSEE123 pKa = 3.99EE124 pKa = 4.6GSLSAYY130 pKa = 10.28DD131 pKa = 4.1IEE133 pKa = 4.66TGDD136 pKa = 4.13VKK138 pKa = 10.52WSSDD142 pKa = 3.58VEE144 pKa = 4.29LGLVGPPALADD155 pKa = 3.37EE156 pKa = 4.57TVYY159 pKa = 11.11VVDD162 pKa = 4.12IDD164 pKa = 3.59ATLRR168 pKa = 11.84AFDD171 pKa = 4.68PSDD174 pKa = 3.64GTIHH178 pKa = 7.01WAEE181 pKa = 3.89QLPGVSEE188 pKa = 4.36GSPAVIGGAVYY199 pKa = 10.7LGDD202 pKa = 3.66TQGTVHH208 pKa = 7.22CLATDD213 pKa = 3.68DD214 pKa = 6.16GEE216 pKa = 4.77RR217 pKa = 11.84LWQADD222 pKa = 3.59TGNWITPSPAVTDD235 pKa = 3.57TAVYY239 pKa = 10.22VCNNDD244 pKa = 3.22GAVYY248 pKa = 10.22AIDD251 pKa = 3.51QTEE254 pKa = 4.94GEE256 pKa = 4.67ILWQFATGGQLRR268 pKa = 11.84TSPAVVDD275 pKa = 3.88GTAFVGSDD283 pKa = 3.69DD284 pKa = 3.7GSLYY288 pKa = 11.21ALAEE292 pKa = 4.36DD293 pKa = 4.13SS294 pKa = 3.86

Molecular weight: 30.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M0B2W1|M0B2W1_NATA1 Uncharacterized protein OS=Natrialba asiatica (strain ATCC 700177 / DSM 12278 / JCM 9576 / FERM P-10747 / NBRC 102637 / 172P1) OX=29540 GN=C481_03032 PE=4 SV=1
MM1 pKa = 7.42TCFDD5 pKa = 4.15DD6 pKa = 4.78VLTKK10 pKa = 10.66RR11 pKa = 11.84LICNVRR17 pKa = 11.84MARR20 pKa = 11.84SHH22 pKa = 6.3LLKK25 pKa = 9.76TVYY28 pKa = 9.09MANLRR33 pKa = 11.84LQLEE37 pKa = 3.96QRR39 pKa = 11.84PIGWISFYY47 pKa = 11.33LSINKK52 pKa = 9.46LMIGGFVRR60 pKa = 11.84SQTALQRR67 pKa = 11.84TT68 pKa = 4.08

Molecular weight: 7.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4175

0

4175

1209462

26

1675

289.7

31.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.68 ± 0.054

0.739 ± 0.012

8.465 ± 0.048

8.67 ± 0.055

3.309 ± 0.026

8.333 ± 0.04

2.008 ± 0.02

4.561 ± 0.033

1.682 ± 0.022

8.794 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.727 ± 0.015

2.5 ± 0.019

4.667 ± 0.025

2.598 ± 0.025

6.348 ± 0.041

5.801 ± 0.032

7.007 ± 0.033

8.308 ± 0.035

1.134 ± 0.015

2.668 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski