Chryseobacterium hominis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Epilithonimonas

Average proteome isoelectric point is 6.68

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2619 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H6HL82|A0A1H6HL82_9FLAO Membrane fusion protein multidrug efflux system OS=Chryseobacterium hominis OX=420404 GN=SAMN05421793_10126 PE=4 SV=1
MM1 pKa = 7.81DD2 pKa = 3.9VDD4 pKa = 3.4IDD6 pKa = 4.11GTIDD10 pKa = 4.6LYY12 pKa = 11.4DD13 pKa = 4.29KK14 pKa = 11.14YY15 pKa = 10.3VTLPGPVEE23 pKa = 4.43NNGCPLSNNGNGVVSADD40 pKa = 3.45EE41 pKa = 4.06TVMNGIEE48 pKa = 4.16FDD50 pKa = 4.21LNSDD54 pKa = 4.15RR55 pKa = 11.84IKK57 pKa = 10.96PNNTPIFNSAISYY70 pKa = 10.1INSNNGSYY78 pKa = 10.56EE79 pKa = 4.32LIGATDD85 pKa = 3.47TRR87 pKa = 11.84GSS89 pKa = 3.41

Molecular weight: 9.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H6J056|A0A1H6J056_9FLAO UvrABC system protein C OS=Chryseobacterium hominis OX=420404 GN=uvrC PE=3 SV=1
MM1 pKa = 7.84PSGKK5 pKa = 9.32KK6 pKa = 9.59RR7 pKa = 11.84KK8 pKa = 7.05RR9 pKa = 11.84HH10 pKa = 5.11KK11 pKa = 10.59VATHH15 pKa = 5.21KK16 pKa = 10.3RR17 pKa = 11.84KK18 pKa = 9.62KK19 pKa = 9.04RR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84ANRR25 pKa = 11.84HH26 pKa = 4.77KK27 pKa = 10.58KK28 pKa = 9.8KK29 pKa = 10.51KK30 pKa = 10.04

Molecular weight: 3.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2619

0

2619

818176

25

2365

312.4

35.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.19 ± 0.049

0.727 ± 0.015

5.535 ± 0.036

6.786 ± 0.064

5.486 ± 0.042

6.217 ± 0.045

1.64 ± 0.021

8.064 ± 0.051

8.501 ± 0.048

9.126 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.303 ± 0.022

6.305 ± 0.051

3.382 ± 0.024

3.56 ± 0.034

3.356 ± 0.029

6.505 ± 0.037

5.258 ± 0.043

6.013 ± 0.035

1.012 ± 0.017

4.035 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski