Granulicatella balaenopterae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Granulicatella

Average proteome isoelectric point is 6.05

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1916 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H9I1X7|A0A1H9I1X7_9LACT Uncharacterized protein OS=Granulicatella balaenopterae OX=137733 GN=SAMN05421767_10430 PE=4 SV=1
MM1 pKa = 7.93DD2 pKa = 4.88FKK4 pKa = 11.32EE5 pKa = 4.16MKK7 pKa = 8.84QTILSLQRR15 pKa = 11.84EE16 pKa = 4.44DD17 pKa = 3.56YY18 pKa = 11.17EE19 pKa = 4.42NFIKK23 pKa = 10.78AIISIEE29 pKa = 3.96KK30 pKa = 9.17DD31 pKa = 3.36TEE33 pKa = 4.15DD34 pKa = 5.14EE35 pKa = 4.2EE36 pKa = 5.7LLDD39 pKa = 4.64ALYY42 pKa = 10.45DD43 pKa = 3.74YY44 pKa = 11.13YY45 pKa = 10.61IDD47 pKa = 5.11VSDD50 pKa = 4.19LCLINDD56 pKa = 4.04EE57 pKa = 4.79FDD59 pKa = 3.52DD60 pKa = 4.96AIYY63 pKa = 10.57VYY65 pKa = 10.77EE66 pKa = 4.6EE67 pKa = 4.86DD68 pKa = 4.99DD69 pKa = 4.56SEE71 pKa = 4.75EE72 pKa = 3.98PLCRR76 pKa = 11.84KK77 pKa = 8.01MLNRR81 pKa = 11.84SYY83 pKa = 11.23FF84 pKa = 3.27

Molecular weight: 10.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H9NET8|A0A1H9NET8_9LACT DNA helicase OS=Granulicatella balaenopterae OX=137733 GN=SAMN05421767_1386 PE=4 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.7QPKK8 pKa = 8.4KK9 pKa = 8.87RR10 pKa = 11.84KK11 pKa = 7.66RR12 pKa = 11.84QRR14 pKa = 11.84VHH16 pKa = 6.34GFRR19 pKa = 11.84KK20 pKa = 10.04RR21 pKa = 11.84MSTKK25 pKa = 9.54NGRR28 pKa = 11.84RR29 pKa = 11.84VIANRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.69GRR39 pKa = 11.84KK40 pKa = 8.69VLSAA44 pKa = 4.05

Molecular weight: 5.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1916

0

1916

618545

26

2409

322.8

36.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.811 ± 0.053

0.833 ± 0.018

5.544 ± 0.045

7.527 ± 0.064

4.24 ± 0.04

6.268 ± 0.048

1.934 ± 0.023

8.026 ± 0.065

7.2 ± 0.048

9.282 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.808 ± 0.028

4.913 ± 0.048

3.299 ± 0.033

4.078 ± 0.042

3.495 ± 0.049

5.666 ± 0.041

5.984 ± 0.074

7.065 ± 0.053

0.936 ± 0.024

4.089 ± 0.047
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski