Orrella dioscoreae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Orrella

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4379 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1C3K1F8|A0A1C3K1F8_9BURK Phage protein OS=Orrella dioscoreae OX=1851544 GN=ODI_03639 PE=4 SV=1
MM1 pKa = 7.97DD2 pKa = 4.87EE3 pKa = 4.25EE4 pKa = 5.19LGASGRR10 pKa = 11.84QYY12 pKa = 11.81DD13 pKa = 4.45LTDD16 pKa = 3.94GPAFSNEE23 pKa = 3.89TGYY26 pKa = 10.58HH27 pKa = 4.07VHH29 pKa = 5.73VVPMDD34 pKa = 4.15LDD36 pKa = 3.39IADD39 pKa = 4.47GQDD42 pKa = 2.99EE43 pKa = 4.3DD44 pKa = 4.32VIEE47 pKa = 4.4VVSALPYY54 pKa = 9.63VGYY57 pKa = 10.8LRR59 pKa = 11.84VTASAA64 pKa = 3.87

Molecular weight: 6.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1C3K6W2|A0A1C3K6W2_9BURK Uncharacterized protein OS=Orrella dioscoreae OX=1851544 GN=ODI_03820 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.0RR14 pKa = 11.84THH16 pKa = 5.76GFRR19 pKa = 11.84VRR21 pKa = 11.84MKK23 pKa = 9.24TRR25 pKa = 11.84AGRR28 pKa = 11.84AIISARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.88GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4379

0

4379

1450914

37

3709

331.3

35.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.471 ± 0.054

0.838 ± 0.011

5.466 ± 0.029

4.966 ± 0.032

3.233 ± 0.023

8.618 ± 0.043

2.18 ± 0.021

4.211 ± 0.027

2.571 ± 0.03

11.085 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.316 ± 0.017

2.388 ± 0.02

5.483 ± 0.029

4.024 ± 0.026

7.433 ± 0.037

5.234 ± 0.027

5.129 ± 0.029

7.613 ± 0.03

1.459 ± 0.017

2.282 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski