Streptomyces katsurahamanus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptomycetales; Streptomycetaceae; Streptomyces

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 319 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A646J0F2|A0A646J0F2_9ACTN Uncharacterized protein (Fragment) OS=Streptomyces katsurahamanus OX=2577098 GN=FFZ77_24940 PE=4 SV=1
MM1 pKa = 7.46YY2 pKa = 10.08YY3 pKa = 10.49VQVCDD8 pKa = 3.64EE9 pKa = 4.36TNSRR13 pKa = 11.84DD14 pKa = 3.37MGGFEE19 pKa = 5.16LATTQSISSASLARR33 pKa = 11.84YY34 pKa = 8.66AVTAWDD40 pKa = 4.37GFGLAYY46 pKa = 10.47DD47 pKa = 4.68FNADD51 pKa = 3.32DD52 pKa = 4.93LYY54 pKa = 11.35SIRR57 pKa = 11.84VWNGEE62 pKa = 4.15DD63 pKa = 3.43VVKK66 pKa = 10.78LHH68 pKa = 6.66TYY70 pKa = 10.6RR71 pKa = 11.84LIDD74 pKa = 3.59GTLTAVV80 pKa = 3.22

Molecular weight: 8.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A646J3J4|A0A646J3J4_9ACTN ABC transporter permease (Fragment) OS=Streptomyces katsurahamanus OX=2577098 GN=FFZ77_21830 PE=4 SV=1
MM1 pKa = 6.63PTKK4 pKa = 10.46RR5 pKa = 11.84GQAQRR10 pKa = 11.84AEE12 pKa = 3.88NEE14 pKa = 3.48IRR16 pKa = 11.84IRR18 pKa = 11.84AAKK21 pKa = 10.15DD22 pKa = 3.02RR23 pKa = 11.84LLCGDD28 pKa = 3.86IPPRR32 pKa = 11.84GKK34 pKa = 10.69CDD36 pKa = 3.58VKK38 pKa = 10.92PLASEE43 pKa = 4.0AAVDD47 pKa = 3.64RR48 pKa = 11.84TAFYY52 pKa = 8.29GTRR55 pKa = 11.84PYY57 pKa = 11.31SDD59 pKa = 3.44LRR61 pKa = 11.84VEE63 pKa = 4.82FGRR66 pKa = 11.84RR67 pKa = 11.84LNAMRR72 pKa = 11.84EE73 pKa = 4.18AGGIPDD79 pKa = 3.56PRR81 pKa = 11.84EE82 pKa = 3.86AQVARR87 pKa = 11.84LKK89 pKa = 10.94AGNTRR94 pKa = 11.84LRR96 pKa = 11.84EE97 pKa = 3.65RR98 pKa = 11.84FAQSEE103 pKa = 4.21RR104 pKa = 11.84TINEE108 pKa = 4.35LIDD111 pKa = 4.29FRR113 pKa = 11.84SQPLAQLAAQHH124 pKa = 5.67EE125 pKa = 4.93EE126 pKa = 3.72IVRR129 pKa = 11.84LRR131 pKa = 11.84EE132 pKa = 3.84AAAGTSTVSRR142 pKa = 11.84LPAPRR147 pKa = 11.84TTVIGTGSS155 pKa = 2.98

Molecular weight: 17.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

319

0

319

73503

21

910

230.4

24.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.723 ± 0.237

0.873 ± 0.039

5.832 ± 0.112

5.564 ± 0.128

2.641 ± 0.085

9.496 ± 0.15

2.428 ± 0.072

3.216 ± 0.103

1.69 ± 0.102

10.594 ± 0.188

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.701 ± 0.061

1.658 ± 0.08

6.171 ± 0.119

2.55 ± 0.087

8.762 ± 0.162

5.269 ± 0.108

5.947 ± 0.13

8.302 ± 0.145

1.497 ± 0.069

2.086 ± 0.084
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski