Amino acid dipepetide frequency for Desulfococcus oleovorans (strain DSM 6200 / JCM 39069 / Hxd3)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
11.277AlaAla: 11.277 ± 0.135
1.528AlaCys: 1.528 ± 0.047
6.389AlaAsp: 6.389 ± 0.096
5.648AlaGlu: 5.648 ± 0.078
4.162AlaPhe: 4.162 ± 0.069
9.348AlaGly: 9.348 ± 0.17
1.836AlaHis: 1.836 ± 0.047
5.36AlaIle: 5.36 ± 0.073
3.769AlaLys: 3.769 ± 0.07
9.622AlaLeu: 9.622 ± 0.113
2.958AlaMet: 2.958 ± 0.052
2.578AlaAsn: 2.578 ± 0.047
3.949AlaPro: 3.949 ± 0.072
2.529AlaGln: 2.529 ± 0.046
6.033AlaArg: 6.033 ± 0.093
4.47AlaSer: 4.47 ± 0.084
4.499AlaThr: 4.499 ± 0.084
8.122AlaVal: 8.122 ± 0.126
1.173AlaTrp: 1.173 ± 0.039
2.831AlaTyr: 2.831 ± 0.058
0.0AlaXaa: 0.0 ± 0.0
Cys
1.171CysAla: 1.171 ± 0.034
0.287CysCys: 0.287 ± 0.02
0.78CysAsp: 0.78 ± 0.033
0.632CysGlu: 0.632 ± 0.024
0.636CysPhe: 0.636 ± 0.026
1.344CysGly: 1.344 ± 0.037
0.405CysHis: 0.405 ± 0.028
0.678CysIle: 0.678 ± 0.032
0.446CysLys: 0.446 ± 0.022
1.301CysLeu: 1.301 ± 0.042
0.349CysMet: 0.349 ± 0.021
0.418CysAsn: 0.418 ± 0.021
0.815CysPro: 0.815 ± 0.036
0.335CysGln: 0.335 ± 0.02
1.032CysArg: 1.032 ± 0.036
0.648CysSer: 0.648 ± 0.025
0.612CysThr: 0.612 ± 0.026
0.889CysVal: 0.889 ± 0.031
0.152CysTrp: 0.152 ± 0.012
0.372CysTyr: 0.372 ± 0.021
0.0CysXaa: 0.0 ± 0.0
Asp
5.317AspAla: 5.317 ± 0.082
0.696AspCys: 0.696 ± 0.027
3.266AspAsp: 3.266 ± 0.089
3.264AspGlu: 3.264 ± 0.075
2.713AspPhe: 2.713 ± 0.052
4.634AspGly: 4.634 ± 0.159
1.294AspHis: 1.294 ± 0.043
4.15AspIle: 4.15 ± 0.07
2.502AspLys: 2.502 ± 0.05
5.985AspLeu: 5.985 ± 0.074
1.716AspMet: 1.716 ± 0.042
2.026AspAsn: 2.026 ± 0.068
3.201AspPro: 3.201 ± 0.066
1.77AspGln: 1.77 ± 0.038
4.241AspArg: 4.241 ± 0.074
2.426AspSer: 2.426 ± 0.065
3.673AspThr: 3.673 ± 0.108
3.771AspVal: 3.771 ± 0.087
0.659AspTrp: 0.659 ± 0.028
1.955AspTyr: 1.955 ± 0.048
0.0AspXaa: 0.0 ± 0.0
Glu
6.125GluAla: 6.125 ± 0.086
0.524GluCys: 0.524 ± 0.026
2.988GluAsp: 2.988 ± 0.067
3.805GluGlu: 3.805 ± 0.085
1.878GluPhe: 1.878 ± 0.044
3.641GluGly: 3.641 ± 0.057
1.106GluHis: 1.106 ± 0.033
4.186GluIle: 4.186 ± 0.074
5.157GluLys: 5.157 ± 0.088
4.923GluLeu: 4.923 ± 0.075
1.912GluMet: 1.912 ± 0.047
2.808GluAsn: 2.808 ± 0.053
2.201GluPro: 2.201 ± 0.048
2.274GluGln: 2.274 ± 0.052
3.248GluArg: 3.248 ± 0.056
2.91GluSer: 2.91 ± 0.049
4.113GluThr: 4.113 ± 0.064
3.634GluVal: 3.634 ± 0.059
0.624GluTrp: 0.624 ± 0.025
1.569GluTyr: 1.569 ± 0.043
0.0GluXaa: 0.0 ± 0.0
Phe
3.877PheAla: 3.877 ± 0.064
0.709PheCys: 0.709 ± 0.029
2.83PheAsp: 2.83 ± 0.058
2.559PheGlu: 2.559 ± 0.049
2.554PhePhe: 2.554 ± 0.061
3.211PheGly: 3.211 ± 0.061
0.906PheHis: 0.906 ± 0.028
2.405PheIle: 2.405 ± 0.056
1.81PheLys: 1.81 ± 0.052
4.352PheLeu: 4.352 ± 0.083
1.036PheMet: 1.036 ± 0.033
1.405PheAsn: 1.405 ± 0.037
1.829PhePro: 1.829 ± 0.044
1.183PheGln: 1.183 ± 0.032
2.091PheArg: 2.091 ± 0.049
3.161PheSer: 3.161 ± 0.053
2.312PheThr: 2.312 ± 0.048
3.072PheVal: 3.072 ± 0.064
0.55PheTrp: 0.55 ± 0.024
1.516PheTyr: 1.516 ± 0.038
0.0PheXaa: 0.0 ± 0.0
Gly
6.913GlyAla: 6.913 ± 0.132
1.221GlyCys: 1.221 ± 0.037
4.297GlyAsp: 4.297 ± 0.18
4.01GlyGlu: 4.01 ± 0.072
3.624GlyPhe: 3.624 ± 0.067
6.065GlyGly: 6.065 ± 0.193
1.736GlyHis: 1.736 ± 0.042
5.35GlyIle: 5.35 ± 0.076
4.178GlyLys: 4.178 ± 0.065
7.663GlyLeu: 7.663 ± 0.094
2.458GlyMet: 2.458 ± 0.046
2.589GlyAsn: 2.589 ± 0.076
2.829GlyPro: 2.829 ± 0.047
2.324GlyGln: 2.324 ± 0.044
5.124GlyArg: 5.124 ± 0.078
3.926GlySer: 3.926 ± 0.124
4.742GlyThr: 4.742 ± 0.15
5.665GlyVal: 5.665 ± 0.105
0.963GlyTrp: 0.963 ± 0.035
2.615GlyTyr: 2.615 ± 0.053
0.0GlyXaa: 0.0 ± 0.0
His
1.776HisAla: 1.776 ± 0.044
0.284HisCys: 0.284 ± 0.017
1.121HisAsp: 1.121 ± 0.03
1.077HisGlu: 1.077 ± 0.035
0.927HisPhe: 0.927 ± 0.03
1.574HisGly: 1.574 ± 0.039
0.59HisHis: 0.59 ± 0.022
1.333HisIle: 1.333 ± 0.036
0.841HisLys: 0.841 ± 0.03
2.183HisLeu: 2.183 ± 0.052
0.529HisMet: 0.529 ± 0.025
0.713HisAsn: 0.713 ± 0.023
1.27HisPro: 1.27 ± 0.03
0.686HisGln: 0.686 ± 0.024
1.321HisArg: 1.321 ± 0.039
0.982HisSer: 0.982 ± 0.031
1.18HisThr: 1.18 ± 0.03
1.401HisVal: 1.401 ± 0.035
0.265HisTrp: 0.265 ± 0.02
0.745HisTyr: 0.745 ± 0.029
0.0HisXaa: 0.0 ± 0.0
Ile
5.443IleAla: 5.443 ± 0.077
0.834IleCys: 0.834 ± 0.031
4.182IleAsp: 4.182 ± 0.074
3.758IleGlu: 3.758 ± 0.06
2.399IlePhe: 2.399 ± 0.05
4.441IleGly: 4.441 ± 0.073
1.367IleHis: 1.367 ± 0.036
3.368IleIle: 3.368 ± 0.067
2.951IleLys: 2.951 ± 0.066
5.409IleLeu: 5.409 ± 0.085
1.318IleMet: 1.318 ± 0.039
2.359IleAsn: 2.359 ± 0.051
2.874IlePro: 2.874 ± 0.054
1.95IleGln: 1.95 ± 0.04
3.59IleArg: 3.59 ± 0.062
3.714IleSer: 3.714 ± 0.071
3.769IleThr: 3.769 ± 0.098
4.181IleVal: 4.181 ± 0.064
0.529IleTrp: 0.529 ± 0.023
1.717IleTyr: 1.717 ± 0.046
0.0IleXaa: 0.0 ± 0.0
Lys
4.842LysAla: 4.842 ± 0.087
0.408LysCys: 0.408 ± 0.024
2.752LysAsp: 2.752 ± 0.05
3.589LysGlu: 3.589 ± 0.074
1.262LysPhe: 1.262 ± 0.033
3.578LysGly: 3.578 ± 0.069
0.9LysHis: 0.9 ± 0.03
3.274LysIle: 3.274 ± 0.075
4.36LysLys: 4.36 ± 0.106
3.548LysLeu: 3.548 ± 0.075
1.455LysMet: 1.455 ± 0.043
2.366LysAsn: 2.366 ± 0.053
2.196LysPro: 2.196 ± 0.045
1.894LysGln: 1.894 ± 0.052
2.706LysArg: 2.706 ± 0.07
2.468LysSer: 2.468 ± 0.052
3.638LysThr: 3.638 ± 0.061
2.914LysVal: 2.914 ± 0.065
0.478LysTrp: 0.478 ± 0.022
1.249LysTyr: 1.249 ± 0.037
0.0LysXaa: 0.0 ± 0.0
Leu
10.405LeuAla: 10.405 ± 0.125
1.358LeuCys: 1.358 ± 0.04
5.325LeuAsp: 5.325 ± 0.077
5.85LeuGlu: 5.85 ± 0.083
4.69LeuPhe: 4.69 ± 0.083
6.51LeuGly: 6.51 ± 0.09
1.785LeuHis: 1.785 ± 0.044
5.025LeuIle: 5.025 ± 0.088
5.09LeuLys: 5.09 ± 0.098
9.325LeuLeu: 9.325 ± 0.143
2.418LeuMet: 2.418 ± 0.057
3.164LeuAsn: 3.164 ± 0.052
4.655LeuPro: 4.655 ± 0.071
2.462LeuGln: 2.462 ± 0.054
4.677LeuArg: 4.677 ± 0.079
6.363LeuSer: 6.363 ± 0.083
5.075LeuThr: 5.075 ± 0.082
7.012LeuVal: 7.012 ± 0.097
1.026LeuTrp: 1.026 ± 0.035
2.717LeuTyr: 2.717 ± 0.066
0.0LeuXaa: 0.0 ± 0.0
Met
3.432MetAla: 3.432 ± 0.066
0.23MetCys: 0.23 ± 0.014
1.733MetAsp: 1.733 ± 0.042
1.892MetGlu: 1.892 ± 0.046
0.848MetPhe: 0.848 ± 0.027
2.338MetGly: 2.338 ± 0.046
0.451MetHis: 0.451 ± 0.02
1.534MetIle: 1.534 ± 0.043
1.575MetLys: 1.575 ± 0.044
2.37MetLeu: 2.37 ± 0.05
0.702MetMet: 0.702 ± 0.026
0.988MetAsn: 0.988 ± 0.031
1.314MetPro: 1.314 ± 0.038
0.756MetGln: 0.756 ± 0.026
1.345MetArg: 1.345 ± 0.035
1.376MetSer: 1.376 ± 0.035
1.736MetThr: 1.736 ± 0.04
2.271MetVal: 2.271 ± 0.049
0.186MetTrp: 0.186 ± 0.012
0.494MetTyr: 0.494 ± 0.022
0.0MetXaa: 0.0 ± 0.0
Asn
2.935AsnAla: 2.935 ± 0.054
0.509AsnCys: 0.509 ± 0.031
1.824AsnAsp: 1.824 ± 0.053
1.619AsnGlu: 1.619 ± 0.045
1.344AsnPhe: 1.344 ± 0.034
2.717AsnGly: 2.717 ± 0.086
0.755AsnHis: 0.755 ± 0.026
2.478AsnIle: 2.478 ± 0.047
1.366AsnLys: 1.366 ± 0.047
3.221AsnLeu: 3.221 ± 0.054
0.946AsnMet: 0.946 ± 0.03
1.326AsnAsn: 1.326 ± 0.045
2.132AsnPro: 2.132 ± 0.048
1.048AsnGln: 1.048 ± 0.028
2.63AsnArg: 2.63 ± 0.054
1.659AsnSer: 1.659 ± 0.043
2.045AsnThr: 2.045 ± 0.06
2.196AsnVal: 2.196 ± 0.056
0.407AsnTrp: 0.407 ± 0.018
0.98AsnTyr: 0.98 ± 0.03
0.0AsnXaa: 0.0 ± 0.0
Pro
5.014ProAla: 5.014 ± 0.08
0.564ProCys: 0.564 ± 0.028
3.897ProAsp: 3.897 ± 0.072
3.985ProGlu: 3.985 ± 0.069
2.204ProPhe: 2.204 ± 0.046
4.103ProGly: 4.103 ± 0.073
0.892ProHis: 0.892 ± 0.03
1.914ProIle: 1.914 ± 0.048
1.621ProLys: 1.621 ± 0.048
4.116ProLeu: 4.116 ± 0.063
1.125ProMet: 1.125 ± 0.033
1.156ProAsn: 1.156 ± 0.041
2.239ProPro: 2.239 ± 0.057
1.093ProGln: 1.093 ± 0.031
2.119ProArg: 2.119 ± 0.045
2.298ProSer: 2.298 ± 0.046
1.836ProThr: 1.836 ± 0.046
4.669ProVal: 4.669 ± 0.067
0.616ProTrp: 0.616 ± 0.025
1.265ProTyr: 1.265 ± 0.04
0.0ProXaa: 0.0 ± 0.0
Gln
3.556GlnAla: 3.556 ± 0.056
0.363GlnCys: 0.363 ± 0.018
1.376GlnAsp: 1.376 ± 0.032
1.928GlnGlu: 1.928 ± 0.046
0.99GlnPhe: 0.99 ± 0.031
2.15GlnGly: 2.15 ± 0.046
0.552GlnHis: 0.552 ± 0.023
1.78GlnIle: 1.78 ± 0.04
1.985GlnLys: 1.985 ± 0.053
2.39GlnLeu: 2.39 ± 0.055
0.944GlnMet: 0.944 ± 0.027
1.108GlnAsn: 1.108 ± 0.031
1.279GlnPro: 1.279 ± 0.036
1.279GlnGln: 1.279 ± 0.039
1.803GlnArg: 1.803 ± 0.046
1.437GlnSer: 1.437 ± 0.031
1.864GlnThr: 1.864 ± 0.042
2.361GlnVal: 2.361 ± 0.05
0.527GlnTrp: 0.527 ± 0.024
0.882GlnTyr: 0.882 ± 0.027
0.0GlnXaa: 0.0 ± 0.0
Arg
4.693ArgAla: 4.693 ± 0.08
0.706ArgCys: 0.706 ± 0.028
2.85ArgAsp: 2.85 ± 0.057
3.631ArgGlu: 3.631 ± 0.072
3.018ArgPhe: 3.018 ± 0.047
3.331ArgGly: 3.331 ± 0.069
1.633ArgHis: 1.633 ± 0.047
4.064ArgIle: 4.064 ± 0.072
3.245ArgLys: 3.245 ± 0.068
6.41ArgLeu: 6.41 ± 0.103
1.787ArgMet: 1.787 ± 0.043
1.861ArgAsn: 1.861 ± 0.044
2.73ArgPro: 2.73 ± 0.057
2.698ArgGln: 2.698 ± 0.065
3.819ArgArg: 3.819 ± 0.091
2.824ArgSer: 2.824 ± 0.042
2.844ArgThr: 2.844 ± 0.052
4.271ArgVal: 4.271 ± 0.062
0.693ArgTrp: 0.693 ± 0.029
1.98ArgTyr: 1.98 ± 0.046
0.0ArgXaa: 0.0 ± 0.0
Ser
5.008SerAla: 5.008 ± 0.098
0.632SerCys: 0.632 ± 0.026
3.166SerAsp: 3.166 ± 0.056
2.797SerGlu: 2.797 ± 0.061
2.367SerPhe: 2.367 ± 0.05
5.398SerGly: 5.398 ± 0.104
1.109SerHis: 1.109 ± 0.036
3.021SerIle: 3.021 ± 0.056
1.962SerLys: 1.962 ± 0.052
5.241SerLeu: 5.241 ± 0.076
1.557SerMet: 1.557 ± 0.033
1.473SerAsn: 1.473 ± 0.04
2.768SerPro: 2.768 ± 0.054
1.473SerGln: 1.473 ± 0.035
3.515SerArg: 3.515 ± 0.066
2.826SerSer: 2.826 ± 0.06
2.541SerThr: 2.541 ± 0.074
3.9SerVal: 3.9 ± 0.08
0.629SerTrp: 0.629 ± 0.029
1.426SerTyr: 1.426 ± 0.043
0.0SerXaa: 0.0 ± 0.0
Thr
5.644ThrAla: 5.644 ± 0.131
0.692ThrCys: 0.692 ± 0.025
3.511ThrAsp: 3.511 ± 0.082
2.925ThrGlu: 2.925 ± 0.057
2.152ThrPhe: 2.152 ± 0.047
6.1ThrGly: 6.1 ± 0.137
1.118ThrHis: 1.118 ± 0.031
3.572ThrIle: 3.572 ± 0.092
1.78ThrLys: 1.78 ± 0.046
5.494ThrLeu: 5.494 ± 0.087
1.229ThrMet: 1.229 ± 0.034
1.488ThrAsn: 1.488 ± 0.054
3.184ThrPro: 3.184 ± 0.068
1.367ThrGln: 1.367 ± 0.032
3.175ThrArg: 3.175 ± 0.059
2.595ThrSer: 2.595 ± 0.063
3.171ThrThr: 3.171 ± 0.109
4.832ThrVal: 4.832 ± 0.147
0.699ThrTrp: 0.699 ± 0.024
1.669ThrTyr: 1.669 ± 0.053
0.0ThrXaa: 0.0 ± 0.0
Val
7.248ValAla: 7.248 ± 0.111
1.181ValCys: 1.181 ± 0.035
4.413ValAsp: 4.413 ± 0.084
4.295ValGlu: 4.295 ± 0.059
3.611ValPhe: 3.611 ± 0.065
4.613ValGly: 4.613 ± 0.083
1.337ValHis: 1.337 ± 0.036
4.4ValIle: 4.4 ± 0.081
3.394ValLys: 3.394 ± 0.058
7.337ValLeu: 7.337 ± 0.105
2.059ValMet: 2.059 ± 0.045
2.669ValAsn: 2.669 ± 0.067
3.362ValPro: 3.362 ± 0.063
1.896ValGln: 1.896 ± 0.042
3.95ValArg: 3.95 ± 0.064
4.596ValSer: 4.596 ± 0.096
4.434ValThr: 4.434 ± 0.124
6.057ValVal: 6.057 ± 0.099
0.792ValTrp: 0.792 ± 0.026
2.173ValTyr: 2.173 ± 0.05
0.0ValXaa: 0.0 ± 0.0
Trp
0.884TrpAla: 0.884 ± 0.035
0.147TrpCys: 0.147 ± 0.01
0.618TrpAsp: 0.618 ± 0.027
0.737TrpGlu: 0.737 ± 0.027
0.592TrpPhe: 0.592 ± 0.027
0.81TrpGly: 0.81 ± 0.029
0.315TrpHis: 0.315 ± 0.017
0.72TrpIle: 0.72 ± 0.026
0.618TrpLys: 0.618 ± 0.024
1.15TrpLeu: 1.15 ± 0.039
0.379TrpMet: 0.379 ± 0.023
0.451TrpAsn: 0.451 ± 0.028
0.536TrpPro: 0.536 ± 0.028
0.53TrpGln: 0.53 ± 0.023
0.665TrpArg: 0.665 ± 0.028
0.568TrpSer: 0.568 ± 0.023
0.527TrpThr: 0.527 ± 0.024
0.764TrpVal: 0.764 ± 0.022
0.173TrpTrp: 0.173 ± 0.012
0.361TrpTyr: 0.361 ± 0.019
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.521TyrAla: 2.521 ± 0.044
0.429TyrCys: 0.429 ± 0.019
1.942TyrAsp: 1.942 ± 0.059
1.626TyrGlu: 1.626 ± 0.04
1.394TyrPhe: 1.394 ± 0.045
2.386TyrGly: 2.386 ± 0.053
0.711TyrHis: 0.711 ± 0.027
1.542TyrIle: 1.542 ± 0.035
1.227TyrLys: 1.227 ± 0.034
2.895TyrLeu: 2.895 ± 0.059
0.691TyrMet: 0.691 ± 0.029
1.188TyrAsn: 1.188 ± 0.041
1.364TyrPro: 1.364 ± 0.041
1.007TyrGln: 1.007 ± 0.031
2.004TyrArg: 2.004 ± 0.048
1.563TyrSer: 1.563 ± 0.036
1.785TyrThr: 1.785 ± 0.049
1.836TyrVal: 1.836 ± 0.041
0.404TyrTrp: 0.404 ± 0.019
1.149TyrTyr: 1.149 ± 0.038
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 3255 proteins (1152799 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski