Capybara microvirus Cap3_SP_416

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W527|A0A4P8W527_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_416 OX=2585448 PE=4 SV=1
MM1 pKa = 7.13FRR3 pKa = 11.84KK4 pKa = 9.05IQNFIPEE11 pKa = 4.15PSSEE15 pKa = 3.61IFYY18 pKa = 11.22NEE20 pKa = 3.73DD21 pKa = 3.03EE22 pKa = 4.2EE23 pKa = 6.38RR24 pKa = 11.84YY25 pKa = 10.51VLVDD29 pKa = 3.74DD30 pKa = 4.21SPIRR34 pKa = 11.84VISSTPIDD42 pKa = 3.76ACNGKK47 pKa = 9.69LPASIPHH54 pKa = 5.52FQEE57 pKa = 4.08FTLTTLLNAGVKK69 pKa = 10.08LEE71 pKa = 3.89QLNTVLLRR79 pKa = 11.84PSVQQFEE86 pKa = 4.31QSFTDD91 pKa = 5.16FFTQTSNEE99 pKa = 4.05FVNHH103 pKa = 5.77YY104 pKa = 10.29EE105 pKa = 4.01SDD107 pKa = 3.91NII109 pKa = 4.19

Molecular weight: 12.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V1FVT1|A0A4V1FVT1_9VIRU Replication initiator protein OS=Capybara microvirus Cap3_SP_416 OX=2585448 PE=4 SV=1
MM1 pKa = 7.82CIAPLEE7 pKa = 4.51IINPKK12 pKa = 9.91LDD14 pKa = 3.67PRR16 pKa = 11.84STDD19 pKa = 3.21PTLLEE24 pKa = 4.37VGCGKK29 pKa = 10.51CEE31 pKa = 3.68EE32 pKa = 4.8CRR34 pKa = 11.84NQRR37 pKa = 11.84KK38 pKa = 9.98DD39 pKa = 2.88EE40 pKa = 4.6WIVRR44 pKa = 11.84TYY46 pKa = 11.08FQMLHH51 pKa = 4.95NRR53 pKa = 11.84EE54 pKa = 3.61RR55 pKa = 11.84GYY57 pKa = 11.54YY58 pKa = 8.32NTFFTLTYY66 pKa = 10.79SDD68 pKa = 4.51DD69 pKa = 4.2CLPHH73 pKa = 8.15LLIDD77 pKa = 4.56GKK79 pKa = 10.27MIPCFNKK86 pKa = 9.53QDD88 pKa = 2.92IFQFFKK94 pKa = 10.49TLKK97 pKa = 8.22KK98 pKa = 10.1HH99 pKa = 5.09LNRR102 pKa = 11.84RR103 pKa = 11.84YY104 pKa = 10.37GINDD108 pKa = 3.18TNYY111 pKa = 10.83LVGCEE116 pKa = 4.39YY117 pKa = 11.2GDD119 pKa = 3.39HH120 pKa = 5.59TQRR123 pKa = 11.84SHH125 pKa = 3.9YY126 pKa = 10.07HH127 pKa = 6.03IMLGCPEE134 pKa = 5.05HH135 pKa = 6.11GTKK138 pKa = 10.31EE139 pKa = 4.06DD140 pKa = 4.18LDD142 pKa = 4.15PRR144 pKa = 11.84DD145 pKa = 3.97LFQFCKK151 pKa = 10.65NYY153 pKa = 8.95WKK155 pKa = 10.46HH156 pKa = 6.63GFMFPRR162 pKa = 11.84VFEE165 pKa = 4.27GGRR168 pKa = 11.84DD169 pKa = 3.42SHH171 pKa = 7.7GYY173 pKa = 7.64DD174 pKa = 3.19HH175 pKa = 7.43KK176 pKa = 10.96PFLVTGDD183 pKa = 3.46ILAPAQYY190 pKa = 9.87ISKK193 pKa = 9.77YY194 pKa = 7.76VCKK197 pKa = 10.57DD198 pKa = 2.99LAFYY202 pKa = 9.55DD203 pKa = 3.56IPEE206 pKa = 4.26ISSLSDD212 pKa = 3.1RR213 pKa = 11.84LDD215 pKa = 3.36KK216 pKa = 11.7EE217 pKa = 4.03EE218 pKa = 3.87FKK220 pKa = 10.78KK221 pKa = 10.94IKK223 pKa = 10.33GSLPFLTVSRR233 pKa = 11.84GFGLYY238 pKa = 10.47LRR240 pKa = 11.84DD241 pKa = 3.84VIMKK245 pKa = 10.16SDD247 pKa = 3.21LHH249 pKa = 7.74NIFKK253 pKa = 10.9YY254 pKa = 10.18GICFEE259 pKa = 4.6GNPRR263 pKa = 11.84RR264 pKa = 11.84HH265 pKa = 6.71KK266 pKa = 10.18IPPYY270 pKa = 9.71ILRR273 pKa = 11.84KK274 pKa = 7.84MCYY277 pKa = 9.93DD278 pKa = 2.95IDD280 pKa = 3.86KK281 pKa = 10.47RR282 pKa = 11.84VVDD285 pKa = 4.6GEE287 pKa = 4.53SKK289 pKa = 10.97VYY291 pKa = 9.67WKK293 pKa = 10.87LNEE296 pKa = 3.85FGKK299 pKa = 10.27QIRR302 pKa = 11.84LQNLDD307 pKa = 3.88NIINSTYY314 pKa = 8.97TSLYY318 pKa = 10.63KK319 pKa = 10.54EE320 pKa = 4.12FSFINLNSDD329 pKa = 3.59YY330 pKa = 9.96MRR332 pKa = 11.84KK333 pKa = 9.19FLSEE337 pKa = 3.83YY338 pKa = 10.25GYY340 pKa = 9.56TSSSFRR346 pKa = 11.84KK347 pKa = 10.51YY348 pKa = 10.39IDD350 pKa = 4.17DD351 pKa = 4.45LLDD354 pKa = 3.61GRR356 pKa = 11.84SFKK359 pKa = 11.05DD360 pKa = 3.16LAIYY364 pKa = 10.02RR365 pKa = 11.84YY366 pKa = 9.78LYY368 pKa = 10.34RR369 pKa = 11.84NRR371 pKa = 11.84ICLHH375 pKa = 5.68EE376 pKa = 5.45SGMVIEE382 pKa = 5.16PGFVSPDD389 pKa = 2.98SSLTEE394 pKa = 3.6KK395 pKa = 10.4RR396 pKa = 11.84VYY398 pKa = 10.18TRR400 pKa = 11.84FFKK403 pKa = 9.87HH404 pKa = 5.06TLYY407 pKa = 10.85NSSIPVMDD415 pKa = 4.09IFRR418 pKa = 11.84DD419 pKa = 3.73HH420 pKa = 7.15RR421 pKa = 11.84GEE423 pKa = 4.15KK424 pKa = 9.93YY425 pKa = 10.26KK426 pKa = 10.99SSSFSKK432 pKa = 10.66KK433 pKa = 10.42FIQDD437 pKa = 3.76TCCFTYY443 pKa = 10.86NSLPLFSGFDD453 pKa = 5.41LILDD457 pKa = 4.05WYY459 pKa = 10.31KK460 pKa = 11.09RR461 pKa = 11.84MSIFHH466 pKa = 6.54KK467 pKa = 10.28KK468 pKa = 9.79YY469 pKa = 9.39NLEE472 pKa = 3.97HH473 pKa = 7.0RR474 pKa = 11.84SIQYY478 pKa = 9.85RR479 pKa = 11.84YY480 pKa = 10.37YY481 pKa = 11.17NYY483 pKa = 9.26IHH485 pKa = 6.25QKK487 pKa = 9.85FVEE490 pKa = 4.44HH491 pKa = 6.57VPP493 pKa = 3.45

Molecular weight: 58.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1611

109

661

402.8

46.31

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.593 ± 1.737

1.614 ± 0.577

6.083 ± 0.456

5.276 ± 0.632

6.269 ± 0.71

5.028 ± 0.477

2.607 ± 0.514

6.021 ± 0.65

5.897 ± 1.033

9.497 ± 0.352

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.986 ± 0.24

6.642 ± 0.823

4.345 ± 0.47

4.904 ± 1.061

4.593 ± 0.855

9.249 ± 0.826

4.531 ± 0.395

4.718 ± 0.823

0.869 ± 0.139

5.276 ± 1.087
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski