Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_416

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.484AlaAla: 2.484 ± 1.659
0.621AlaCys: 0.621 ± 0.802
0.0AlaAsp: 0.0 ± 0.0
1.242AlaGlu: 1.242 ± 0.6
1.242AlaPhe: 1.242 ± 0.383
4.348AlaGly: 4.348 ± 1.641
0.621AlaHis: 0.621 ± 0.593
3.106AlaIle: 3.106 ± 1.452
2.484AlaLys: 2.484 ± 2.373
6.832AlaLeu: 6.832 ± 3.436
1.242AlaMet: 1.242 ± 1.187
3.106AlaAsn: 3.106 ± 1.666
4.969AlaPro: 4.969 ± 1.344
3.727AlaGln: 3.727 ± 1.321
1.863AlaArg: 1.863 ± 1.78
3.106AlaSer: 3.106 ± 1.179
2.484AlaThr: 2.484 ± 1.303
1.863AlaVal: 1.863 ± 0.899
0.621AlaTrp: 0.621 ± 0.47
0.0AlaTyr: 0.0 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.621CysCys: 0.621 ± 0.56
0.0CysAsp: 0.0 ± 0.0
1.863CysGlu: 1.863 ± 0.837
3.727CysPhe: 3.727 ± 1.15
0.621CysGly: 0.621 ± 0.56
0.0CysHis: 0.0 ± 0.0
1.242CysIle: 1.242 ± 0.383
1.242CysLys: 1.242 ± 1.12
1.863CysLeu: 1.863 ± 0.837
0.0CysMet: 0.0 ± 0.0
0.621CysAsn: 0.621 ± 0.802
0.621CysPro: 0.621 ± 0.56
0.0CysGln: 0.0 ± 0.0
1.242CysArg: 1.242 ± 0.383
0.621CysSer: 0.621 ± 0.47
0.0CysThr: 0.0 ± 0.0
0.621CysVal: 0.621 ± 0.47
0.0CysTrp: 0.0 ± 0.0
1.242CysTyr: 1.242 ± 0.383
0.0CysXaa: 0.0 ± 0.0
Asp
3.727AspAla: 3.727 ± 2.99
0.621AspCys: 0.621 ± 0.56
3.727AspAsp: 3.727 ± 0.648
2.484AspGlu: 2.484 ± 0.714
2.484AspPhe: 2.484 ± 1.375
3.727AspGly: 3.727 ± 0.86
2.484AspHis: 2.484 ± 1.371
5.59AspIle: 5.59 ± 1.903
2.484AspLys: 2.484 ± 0.767
9.317AspLeu: 9.317 ± 2.23
1.242AspMet: 1.242 ± 0.939
3.727AspAsn: 3.727 ± 0.816
3.106AspPro: 3.106 ± 1.205
1.242AspGln: 1.242 ± 0.939
2.484AspArg: 2.484 ± 0.866
3.106AspSer: 3.106 ± 0.986
2.484AspThr: 2.484 ± 0.679
3.106AspVal: 3.106 ± 1.514
0.621AspTrp: 0.621 ± 0.56
3.106AspTyr: 3.106 ± 0.775
0.0AspXaa: 0.0 ± 0.0
Glu
1.242GluAla: 1.242 ± 0.6
0.621GluCys: 0.621 ± 0.56
2.484GluAsp: 2.484 ± 0.714
3.727GluGlu: 3.727 ± 1.164
4.348GluPhe: 4.348 ± 1.916
1.242GluGly: 1.242 ± 1.12
2.484GluHis: 2.484 ± 1.614
4.348GluIle: 4.348 ± 0.756
1.863GluLys: 1.863 ± 0.837
3.106GluLeu: 3.106 ± 1.455
0.621GluMet: 0.621 ± 0.593
4.969GluAsn: 4.969 ± 2.343
2.484GluPro: 2.484 ± 0.83
1.863GluGln: 1.863 ± 1.65
3.106GluArg: 3.106 ± 1.836
6.832GluSer: 6.832 ± 1.359
1.242GluThr: 1.242 ± 0.6
3.106GluVal: 3.106 ± 0.813
1.242GluTrp: 1.242 ± 0.383
1.863GluTyr: 1.863 ± 0.837
0.0GluXaa: 0.0 ± 0.0
Phe
2.484PheAla: 2.484 ± 1.2
0.621PheCys: 0.621 ± 0.56
4.348PheAsp: 4.348 ± 1.729
3.106PheGlu: 3.106 ± 0.995
2.484PhePhe: 2.484 ± 1.953
3.106PheGly: 3.106 ± 0.368
1.242PheHis: 1.242 ± 0.383
3.727PheIle: 3.727 ± 1.027
6.211PheLys: 6.211 ± 1.476
3.727PheLeu: 3.727 ± 0.86
0.621PheMet: 0.621 ± 0.56
3.106PheAsn: 3.106 ± 0.775
1.242PhePro: 1.242 ± 0.383
3.727PheGln: 3.727 ± 1.449
3.727PheArg: 3.727 ± 0.648
5.59PheSer: 5.59 ± 1.117
4.348PheThr: 4.348 ± 2.431
4.969PheVal: 4.969 ± 0.775
0.0PheTrp: 0.0 ± 0.0
4.348PheTyr: 4.348 ± 1.85
0.0PheXaa: 0.0 ± 0.0
Gly
2.484GlyAla: 2.484 ± 1.2
1.863GlyCys: 1.863 ± 1.68
3.106GlyAsp: 3.106 ± 0.957
3.727GlyGlu: 3.727 ± 0.501
6.211GlyPhe: 6.211 ± 1.156
1.242GlyGly: 1.242 ± 0.69
1.242GlyHis: 1.242 ± 0.939
2.484GlyIle: 2.484 ± 0.767
3.727GlyLys: 3.727 ± 1.372
3.727GlyLeu: 3.727 ± 1.267
0.621GlyMet: 0.621 ± 0.56
3.727GlyAsn: 3.727 ± 1.321
1.242GlyPro: 1.242 ± 0.6
1.863GlyGln: 1.863 ± 1.409
1.863GlyArg: 1.863 ± 0.837
3.106GlySer: 3.106 ± 0.775
1.242GlyThr: 1.242 ± 0.69
1.863GlyVal: 1.863 ± 1.016
0.621GlyTrp: 0.621 ± 0.593
4.348GlyTyr: 4.348 ± 1.305
0.0GlyXaa: 0.0 ± 0.0
His
0.621HisAla: 0.621 ± 0.47
0.621HisCys: 0.621 ± 0.47
0.0HisAsp: 0.0 ± 0.0
1.242HisGlu: 1.242 ± 0.69
1.863HisPhe: 1.863 ± 0.81
3.106HisGly: 3.106 ± 1.175
0.0HisHis: 0.0 ± 0.0
1.863HisIle: 1.863 ± 0.649
1.863HisLys: 1.863 ± 1.68
1.242HisLeu: 1.242 ± 1.12
1.242HisMet: 1.242 ± 0.578
2.484HisAsn: 2.484 ± 0.767
0.0HisPro: 0.0 ± 0.0
1.863HisGln: 1.863 ± 0.649
1.242HisArg: 1.242 ± 1.12
0.621HisSer: 0.621 ± 0.47
3.106HisThr: 3.106 ± 0.957
0.621HisVal: 0.621 ± 0.56
0.0HisTrp: 0.0 ± 0.0
2.484HisTyr: 2.484 ± 0.714
0.0HisXaa: 0.0 ± 0.0
Ile
0.621IleAla: 0.621 ± 0.56
1.242IleCys: 1.242 ± 1.12
4.969IleAsp: 4.969 ± 1.05
2.484IleGlu: 2.484 ± 0.398
4.348IlePhe: 4.348 ± 1.849
2.484IleGly: 2.484 ± 1.878
1.242IleHis: 1.242 ± 0.383
3.727IleIle: 3.727 ± 0.501
3.727IleLys: 3.727 ± 1.321
4.348IleLeu: 4.348 ± 0.684
1.863IleMet: 1.863 ± 1.332
4.348IleAsn: 4.348 ± 1.535
5.59IlePro: 5.59 ± 2.095
3.727IleGln: 3.727 ± 1.164
1.863IleArg: 1.863 ± 1.065
6.211IleSer: 6.211 ± 1.595
1.242IleThr: 1.242 ± 0.939
3.106IleVal: 3.106 ± 0.813
0.0IleTrp: 0.0 ± 0.0
3.106IleTyr: 3.106 ± 1.514
0.0IleXaa: 0.0 ± 0.0
Lys
3.727LysAla: 3.727 ± 1.8
1.242LysCys: 1.242 ± 0.383
3.727LysAsp: 3.727 ± 1.314
2.484LysGlu: 2.484 ± 1.614
4.969LysPhe: 4.969 ± 0.798
2.484LysGly: 2.484 ± 0.866
2.484LysHis: 2.484 ± 1.614
2.484LysIle: 2.484 ± 1.415
5.59LysLys: 5.59 ± 1.555
4.348LysLeu: 4.348 ± 1.752
2.484LysMet: 2.484 ± 0.767
2.484LysAsn: 2.484 ± 0.866
1.242LysPro: 1.242 ± 0.383
3.106LysGln: 3.106 ± 0.962
3.727LysArg: 3.727 ± 0.86
3.727LysSer: 3.727 ± 0.501
1.863LysThr: 1.863 ± 0.311
1.863LysVal: 1.863 ± 0.311
0.0LysTrp: 0.0 ± 0.0
4.969LysTyr: 4.969 ± 2.004
0.0LysXaa: 0.0 ± 0.0
Leu
4.969LeuAla: 4.969 ± 2.095
0.621LeuCys: 0.621 ± 0.47
7.453LeuAsp: 7.453 ± 1.719
4.348LeuGlu: 4.348 ± 1.508
3.727LeuPhe: 3.727 ± 1.298
6.832LeuGly: 6.832 ± 2.388
3.106LeuHis: 3.106 ± 1.175
3.727LeuIle: 3.727 ± 0.501
4.348LeuLys: 4.348 ± 1.35
13.043LeuLeu: 13.043 ± 2.629
0.0LeuMet: 0.0 ± 0.0
8.696LeuAsn: 8.696 ± 1.49
5.59LeuPro: 5.59 ± 1.329
4.969LeuGln: 4.969 ± 1.86
3.727LeuArg: 3.727 ± 1.027
6.832LeuSer: 6.832 ± 1.659
4.348LeuThr: 4.348 ± 1.508
4.969LeuVal: 4.969 ± 0.775
1.242LeuTrp: 1.242 ± 0.939
2.484LeuTyr: 2.484 ± 2.239
0.0LeuXaa: 0.0 ± 0.0
Met
0.0MetAla: 0.0 ± 0.0
1.242MetCys: 1.242 ± 1.12
2.484MetAsp: 2.484 ± 1.707
0.621MetGlu: 0.621 ± 0.47
1.242MetPhe: 1.242 ± 1.036
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
1.242MetIle: 1.242 ± 0.383
1.863MetLys: 1.863 ± 0.649
3.106MetLeu: 3.106 ± 0.962
0.0MetMet: 0.0 ± 0.0
0.621MetAsn: 0.621 ± 0.47
0.621MetPro: 0.621 ± 0.47
0.621MetGln: 0.621 ± 0.593
0.621MetArg: 0.621 ± 0.56
4.348MetSer: 4.348 ± 1.35
0.621MetThr: 0.621 ± 0.47
0.621MetVal: 0.621 ± 0.56
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.484AsnAla: 2.484 ± 1.183
1.863AsnCys: 1.863 ± 1.409
3.727AsnAsp: 3.727 ± 0.944
3.727AsnGlu: 3.727 ± 1.631
5.59AsnPhe: 5.59 ± 2.4
2.484AsnGly: 2.484 ± 0.927
3.106AsnHis: 3.106 ± 1.226
2.484AsnIle: 2.484 ± 1.154
2.484AsnLys: 2.484 ± 0.398
4.348AsnLeu: 4.348 ± 0.684
2.484AsnMet: 2.484 ± 1.659
1.242AsnAsn: 1.242 ± 0.6
4.348AsnPro: 4.348 ± 0.539
3.106AsnGln: 3.106 ± 0.813
4.969AsnArg: 4.969 ± 0.563
7.453AsnSer: 7.453 ± 1.244
1.242AsnThr: 1.242 ± 1.036
3.106AsnVal: 3.106 ± 1.666
1.242AsnTrp: 1.242 ± 0.6
4.969AsnTyr: 4.969 ± 0.798
0.0AsnXaa: 0.0 ± 0.0
Pro
2.484ProAla: 2.484 ± 0.83
0.621ProCys: 0.621 ± 0.56
1.863ProAsp: 1.863 ± 0.649
5.59ProGlu: 5.59 ± 0.933
1.863ProPhe: 1.863 ± 0.837
0.621ProGly: 0.621 ± 0.56
1.242ProHis: 1.242 ± 1.036
3.106ProIle: 3.106 ± 1.755
0.621ProLys: 0.621 ± 0.56
4.969ProLeu: 4.969 ± 1.344
0.621ProMet: 0.621 ± 0.434
2.484ProAsn: 2.484 ± 1.303
0.621ProPro: 0.621 ± 0.56
1.863ProGln: 1.863 ± 0.899
3.106ProArg: 3.106 ± 1.92
4.348ProSer: 4.348 ± 1.938
1.863ProThr: 1.863 ± 0.649
3.106ProVal: 3.106 ± 0.813
0.621ProTrp: 0.621 ± 0.47
1.242ProTyr: 1.242 ± 0.383
0.0ProXaa: 0.0 ± 0.0
Gln
2.484GlnAla: 2.484 ± 1.2
1.242GlnCys: 1.242 ± 0.939
2.484GlnAsp: 2.484 ± 0.679
0.621GlnGlu: 0.621 ± 0.802
4.348GlnPhe: 4.348 ± 0.756
1.242GlnGly: 1.242 ± 0.6
0.621GlnHis: 0.621 ± 0.47
3.727GlnIle: 3.727 ± 0.944
3.106GlnLys: 3.106 ± 1.452
3.727GlnLeu: 3.727 ± 1.349
1.863GlnMet: 1.863 ± 0.311
3.727GlnAsn: 3.727 ± 0.816
1.242GlnPro: 1.242 ± 0.939
2.484GlnGln: 2.484 ± 0.927
1.242GlnArg: 1.242 ± 1.12
6.211GlnSer: 6.211 ± 3.183
3.727GlnThr: 3.727 ± 1.62
1.242GlnVal: 1.242 ± 0.6
0.621GlnTrp: 0.621 ± 0.593
3.106GlnTyr: 3.106 ± 0.957
0.0GlnXaa: 0.0 ± 0.0
Arg
1.242ArgAla: 1.242 ± 0.6
0.0ArgCys: 0.0 ± 0.0
4.348ArgAsp: 4.348 ± 1.776
1.863ArgGlu: 1.863 ± 1.159
1.863ArgPhe: 1.863 ± 0.311
2.484ArgGly: 2.484 ± 1.371
1.242ArgHis: 1.242 ± 0.383
1.863ArgIle: 1.863 ± 0.649
5.59ArgLys: 5.59 ± 2.123
3.727ArgLeu: 3.727 ± 1.298
0.621ArgMet: 0.621 ± 0.56
1.863ArgAsn: 1.863 ± 1.108
0.621ArgPro: 0.621 ± 0.802
1.863ArgGln: 1.863 ± 1.097
1.863ArgArg: 1.863 ± 1.108
3.727ArgSer: 3.727 ± 1.752
1.863ArgThr: 1.863 ± 0.311
3.727ArgVal: 3.727 ± 1.372
0.0ArgTrp: 0.0 ± 0.0
5.59ArgTyr: 5.59 ± 0.74
0.0ArgXaa: 0.0 ± 0.0
Ser
7.453SerAla: 7.453 ± 3.914
1.242SerCys: 1.242 ± 0.939
8.075SerAsp: 8.075 ± 0.663
6.832SerGlu: 6.832 ± 1.919
6.832SerPhe: 6.832 ± 0.684
7.453SerGly: 7.453 ± 2.051
2.484SerHis: 2.484 ± 0.767
6.832SerIle: 6.832 ± 0.569
3.106SerLys: 3.106 ± 1.205
10.559SerLeu: 10.559 ± 1.227
1.863SerMet: 1.863 ± 0.829
3.727SerAsn: 3.727 ± 1.609
1.863SerPro: 1.863 ± 1.065
1.242SerGln: 1.242 ± 0.6
3.106SerArg: 3.106 ± 0.813
12.422SerSer: 12.422 ± 1.247
5.59SerThr: 5.59 ± 0.571
1.242SerVal: 1.242 ± 0.786
0.621SerTrp: 0.621 ± 0.47
0.0SerTyr: 0.0 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
1.242ThrAla: 1.242 ± 0.6
0.621ThrCys: 0.621 ± 0.56
3.106ThrAsp: 3.106 ± 0.571
1.863ThrGlu: 1.863 ± 0.649
1.863ThrPhe: 1.863 ± 0.311
1.863ThrGly: 1.863 ± 0.649
0.621ThrHis: 0.621 ± 0.47
0.621ThrIle: 0.621 ± 0.47
1.242ThrLys: 1.242 ± 0.383
4.348ThrLeu: 4.348 ± 2.813
0.621ThrMet: 0.621 ± 0.47
4.969ThrAsn: 4.969 ± 1.671
2.484ThrPro: 2.484 ± 0.927
3.727ThrGln: 3.727 ± 2.354
1.242ThrArg: 1.242 ± 0.383
3.106ThrSer: 3.106 ± 0.995
3.106ThrThr: 3.106 ± 1.785
3.727ThrVal: 3.727 ± 1.439
0.0ThrTrp: 0.0 ± 0.0
4.969ThrTyr: 4.969 ± 1.357
0.0ThrXaa: 0.0 ± 0.0
Val
4.348ValAla: 4.348 ± 2.036
0.621ValCys: 0.621 ± 0.56
1.863ValAsp: 1.863 ± 0.813
0.621ValGlu: 0.621 ± 0.56
2.484ValPhe: 2.484 ± 1.066
1.242ValGly: 1.242 ± 1.12
0.621ValHis: 0.621 ± 0.47
3.727ValIle: 3.727 ± 1.027
3.106ValLys: 3.106 ± 1.179
4.348ValLeu: 4.348 ± 1.676
0.621ValMet: 0.621 ± 0.56
1.863ValAsn: 1.863 ± 1.016
4.348ValPro: 4.348 ± 2.435
3.727ValGln: 3.727 ± 1.349
1.242ValArg: 1.242 ± 0.383
5.59ValSer: 5.59 ± 1.192
2.484ValThr: 2.484 ± 1.066
2.484ValVal: 2.484 ± 1.066
0.0ValTrp: 0.0 ± 0.0
1.863ValTyr: 1.863 ± 0.837
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
0.621TrpPhe: 0.621 ± 0.593
0.621TrpGly: 0.621 ± 0.47
0.0TrpHis: 0.0 ± 0.0
1.242TrpIle: 1.242 ± 0.383
1.242TrpLys: 1.242 ± 1.12
0.621TrpLeu: 0.621 ± 0.47
0.0TrpMet: 0.0 ± 0.0
1.242TrpAsn: 1.242 ± 0.6
0.0TrpPro: 0.0 ± 0.0
1.242TrpGln: 1.242 ± 0.6
0.621TrpArg: 0.621 ± 0.47
0.621TrpSer: 0.621 ± 0.47
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.621TrpTyr: 0.621 ± 0.56
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.863TyrAla: 1.863 ± 1.409
0.0TyrCys: 0.0 ± 0.0
3.106TyrAsp: 3.106 ± 1.175
4.348TyrGlu: 4.348 ± 2.665
0.621TyrPhe: 0.621 ± 0.56
3.106TyrGly: 3.106 ± 1.92
1.242TyrHis: 1.242 ± 0.383
3.106TyrIle: 3.106 ± 1.92
3.106TyrLys: 3.106 ± 1.175
3.727TyrLeu: 3.727 ± 0.86
0.621TyrMet: 0.621 ± 0.56
7.453TyrAsn: 7.453 ± 2.307
1.242TyrPro: 1.242 ± 0.939
3.106TyrGln: 3.106 ± 1.741
3.106TyrArg: 3.106 ± 1.205
4.969TyrSer: 4.969 ± 2.9
2.484TyrThr: 2.484 ± 1.371
1.863TyrVal: 1.863 ± 0.813
1.242TyrTrp: 1.242 ± 1.12
2.484TyrTyr: 2.484 ± 0.767
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (1611 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski