Chayote yellow mosaic virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 8.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|O56817|O56817_9GEMI Transcriptional activator protein OS=Chayote yellow mosaic virus OX=222450 GN=C2 PE=3 SV=1
MM1 pKa = 7.71APPKK5 pKa = 10.21RR6 pKa = 11.84FQINAKK12 pKa = 10.09NYY14 pKa = 8.52FLTYY18 pKa = 8.4PQCSLTKK25 pKa = 10.58EE26 pKa = 4.03EE27 pKa = 5.05ALSQLRR33 pKa = 11.84SLRR36 pKa = 11.84TPTNQKK42 pKa = 9.29YY43 pKa = 10.4IKK45 pKa = 9.9VCRR48 pKa = 11.84EE49 pKa = 3.77LHH51 pKa = 6.95EE52 pKa = 5.73DD53 pKa = 3.93GQPHH57 pKa = 6.38LHH59 pKa = 6.88ALIQFEE65 pKa = 4.94GKK67 pKa = 9.96YY68 pKa = 9.77KK69 pKa = 10.46CQNQRR74 pKa = 11.84FFDD77 pKa = 4.04LVSPTRR83 pKa = 11.84STHH86 pKa = 4.99FHH88 pKa = 6.94PNVQGAKK95 pKa = 9.25SCSDD99 pKa = 3.11VKK101 pKa = 11.23SYY103 pKa = 10.83IEE105 pKa = 4.2KK106 pKa = 10.82DD107 pKa = 3.05GDD109 pKa = 4.05SIEE112 pKa = 4.08WGEE115 pKa = 3.9FQVDD119 pKa = 3.21GRR121 pKa = 11.84SARR124 pKa = 11.84GGCHH128 pKa = 6.55KK129 pKa = 11.07ANDD132 pKa = 3.93AAAEE136 pKa = 3.94ALNAGSAEE144 pKa = 3.93AALAIIKK151 pKa = 9.62EE152 pKa = 4.4KK153 pKa = 10.84LPKK156 pKa = 10.24DD157 pKa = 3.94YY158 pKa = 10.67IFQYY162 pKa = 11.18HH163 pKa = 6.43NIKK166 pKa = 10.91ANLDD170 pKa = 3.91KK171 pKa = 10.8IFQAPPEE178 pKa = 4.5VYY180 pKa = 10.36VSPFCASSFTQVPDD194 pKa = 3.38EE195 pKa = 4.13LQRR198 pKa = 11.84WASANVMDD206 pKa = 5.59AAARR210 pKa = 11.84PWRR213 pKa = 11.84PSSIIVEE220 pKa = 4.3GDD222 pKa = 3.0SRR224 pKa = 11.84TGKK227 pKa = 8.52TMWARR232 pKa = 11.84SLGPHH237 pKa = 6.71NYY239 pKa = 10.18LCGHH243 pKa = 7.38LDD245 pKa = 4.18LSPKK249 pKa = 10.09VYY251 pKa = 10.85SNSAWYY257 pKa = 10.31NVIDD261 pKa = 5.38DD262 pKa = 4.41VDD264 pKa = 3.61PHH266 pKa = 5.85YY267 pKa = 11.0LKK269 pKa = 10.7HH270 pKa = 6.2FKK272 pKa = 10.7EE273 pKa = 4.46FMGAQRR279 pKa = 11.84DD280 pKa = 3.81WQSNTKK286 pKa = 9.26YY287 pKa = 10.63GKK289 pKa = 9.49PIQIKK294 pKa = 10.42GGIPTIFLCNPGPTSSYY311 pKa = 11.06KK312 pKa = 10.58EE313 pKa = 3.96YY314 pKa = 10.91LDD316 pKa = 3.48EE317 pKa = 5.94DD318 pKa = 4.11KK319 pKa = 11.33NISLKK324 pKa = 10.7AWALKK329 pKa = 10.05NAAFCTLTQPLYY341 pKa = 11.08SSADD345 pKa = 3.35QSSTPNRR352 pKa = 11.84EE353 pKa = 4.14EE354 pKa = 4.29EE355 pKa = 4.11SHH357 pKa = 6.53SAQKK361 pKa = 10.65DD362 pKa = 3.28

Molecular weight: 40.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|O56816|O56816_9GEMI Replication-associated protein OS=Chayote yellow mosaic virus OX=222450 GN=C1 PE=3 SV=1
MM1 pKa = 7.71SKK3 pKa = 10.35RR4 pKa = 11.84PADD7 pKa = 3.94IIISTPVSKK16 pKa = 10.56VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 3.03SPYY27 pKa = 7.84TNRR30 pKa = 11.84VAVPIVQGTNKK41 pKa = 9.27RR42 pKa = 11.84RR43 pKa = 11.84SWTYY47 pKa = 8.86RR48 pKa = 11.84PSYY51 pKa = 9.78RR52 pKa = 11.84KK53 pKa = 8.69PRR55 pKa = 11.84MYY57 pKa = 10.91RR58 pKa = 11.84MYY60 pKa = 10.44RR61 pKa = 11.84SPDD64 pKa = 3.21VPRR67 pKa = 11.84GCEE70 pKa = 4.4GPCKK74 pKa = 9.97IQSFDD79 pKa = 3.31QRR81 pKa = 11.84DD82 pKa = 4.22SVVHH86 pKa = 5.94TGNVRR91 pKa = 11.84CLSDD95 pKa = 3.23VTRR98 pKa = 11.84GGGLTHH104 pKa = 6.43RR105 pKa = 11.84TGKK108 pKa = 10.03RR109 pKa = 11.84FCIKK113 pKa = 10.13SVYY116 pKa = 10.35VLGKK120 pKa = 9.39VWMDD124 pKa = 3.42EE125 pKa = 3.95NVKK128 pKa = 10.46KK129 pKa = 10.93SNHH132 pKa = 5.55TNTCLFWLVRR142 pKa = 11.84DD143 pKa = 3.72RR144 pKa = 11.84RR145 pKa = 11.84PYY147 pKa = 10.66GSSPQDD153 pKa = 3.22FGQVFNMFDD162 pKa = 3.99NEE164 pKa = 4.12PSTATVMNDD173 pKa = 2.37KK174 pKa = 10.42RR175 pKa = 11.84DD176 pKa = 3.49RR177 pKa = 11.84YY178 pKa = 9.22QVLRR182 pKa = 11.84RR183 pKa = 11.84FQVTVTGGPSGCKK196 pKa = 8.84EE197 pKa = 3.5AAIVKK202 pKa = 10.02RR203 pKa = 11.84FFRR206 pKa = 11.84LNHH209 pKa = 5.74HH210 pKa = 5.45VTYY213 pKa = 10.77NHH215 pKa = 6.09QEE217 pKa = 3.49AAKK220 pKa = 10.4YY221 pKa = 9.25EE222 pKa = 4.13NHH224 pKa = 6.46TEE226 pKa = 3.99NALLLYY232 pKa = 7.29MACTHH237 pKa = 7.07ASNPVYY243 pKa = 10.67ASLKK247 pKa = 8.7IRR249 pKa = 11.84MYY251 pKa = 10.72FYY253 pKa = 11.16DD254 pKa = 3.65SVINN258 pKa = 3.86

Molecular weight: 29.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

974

85

362

194.8

22.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.468 ± 1.218

2.259 ± 0.356

5.236 ± 0.342

4.312 ± 0.646

4.517 ± 0.608

4.517 ± 0.519

3.696 ± 0.626

5.647 ± 1.098

5.647 ± 1.068

7.084 ± 1.135

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.745 ± 0.557

5.133 ± 0.842

6.057 ± 0.899

4.62 ± 0.537

7.392 ± 1.537

9.343 ± 1.891

5.236 ± 0.848

6.057 ± 1.455

1.437 ± 0.225

3.593 ± 0.94
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski