Maize striate mosaic virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus

Average proteome isoelectric point is 7.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A286QV14|A0A286QV14_9GEMI Replication-associated protein OS=Maize striate mosaic virus OX=2025388 PE=3 SV=1
MM1 pKa = 7.24SHH3 pKa = 5.59TSFRR7 pKa = 11.84FRR9 pKa = 11.84AKK11 pKa = 10.45NVFLTYY17 pKa = 9.25PRR19 pKa = 11.84CPIGPEE25 pKa = 3.94FLCDD29 pKa = 3.78HH30 pKa = 7.2LWNLVTPYY38 pKa = 10.93DD39 pKa = 3.74PLYY42 pKa = 10.82VHH44 pKa = 6.93VAQEE48 pKa = 3.85NHH50 pKa = 6.79KK51 pKa = 11.0DD52 pKa = 3.66GGLHH56 pKa = 5.08SHH58 pKa = 6.28VLIQTRR64 pKa = 11.84IEE66 pKa = 4.04ISTFDD71 pKa = 3.64PTYY74 pKa = 10.78FDD76 pKa = 3.58YY77 pKa = 10.96TGTSIPGAVVFHH89 pKa = 6.59PNIQACRR96 pKa = 11.84NVRR99 pKa = 11.84DD100 pKa = 3.51CLAYY104 pKa = 9.62IRR106 pKa = 11.84KK107 pKa = 8.28NTINEE112 pKa = 3.86VSKK115 pKa = 11.12GAFKK119 pKa = 10.88CSGAGRR125 pKa = 11.84PKK127 pKa = 10.47KK128 pKa = 9.99QDD130 pKa = 3.29SAPSRR135 pKa = 11.84DD136 pKa = 3.25AKK138 pKa = 9.94MCQIMSSATSRR149 pKa = 11.84SDD151 pKa = 3.35YY152 pKa = 11.09LSMVRR157 pKa = 11.84GAFPFEE163 pKa = 4.23WATKK167 pKa = 9.6LAQFEE172 pKa = 4.47YY173 pKa = 10.32SASKK177 pKa = 10.5LFPDD181 pKa = 4.87APTTNAIPSNIDD193 pKa = 3.2LTCHH197 pKa = 5.53EE198 pKa = 5.77NIMPWLRR205 pKa = 11.84DD206 pKa = 3.36DD207 pKa = 5.24LYY209 pKa = 10.42TVSEE213 pKa = 4.46FSYY216 pKa = 9.75FLCTGSLDD224 pKa = 3.88PKK226 pKa = 11.42GDD228 pKa = 3.92LTWMADD234 pKa = 3.14HH235 pKa = 6.72TRR237 pKa = 11.84NEE239 pKa = 4.23GKK241 pKa = 10.34EE242 pKa = 4.03DD243 pKa = 3.48VPEE246 pKa = 4.39ASTYY250 pKa = 10.43AEE252 pKa = 3.71EE253 pKa = 4.08RR254 pKa = 11.84GRR256 pKa = 11.84ARR258 pKa = 11.84QHH260 pKa = 4.96GQEE263 pKa = 4.18ASGHH267 pKa = 4.62TTTSNTRR274 pKa = 11.84WTTSPGAKK282 pKa = 8.8RR283 pKa = 11.84PRR285 pKa = 11.84MSSS288 pKa = 2.83

Molecular weight: 32.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A286QV10|A0A286QV10_9GEMI Replication-associated protein OS=Maize striate mosaic virus OX=2025388 PE=3 SV=1
MM1 pKa = 7.86RR2 pKa = 11.84PMTGKK7 pKa = 10.3RR8 pKa = 11.84KK9 pKa = 8.45RR10 pKa = 11.84TAGSSSVNRR19 pKa = 11.84RR20 pKa = 11.84KK21 pKa = 9.9SRR23 pKa = 11.84RR24 pKa = 11.84VLPRR28 pKa = 11.84TVAPYY33 pKa = 9.98SQLPSRR39 pKa = 11.84LPSLQVQTFASQGSAVVEE57 pKa = 4.33VKK59 pKa = 10.75KK60 pKa = 10.94GGNCLMVTSYY70 pKa = 11.4SRR72 pKa = 11.84GSDD75 pKa = 2.84EE76 pKa = 4.53SQRR79 pKa = 11.84HH80 pKa = 4.42TNEE83 pKa = 3.16TMTYY87 pKa = 10.56KK88 pKa = 10.15MSLDD92 pKa = 3.23HH93 pKa = 8.04VMVLRR98 pKa = 11.84AEE100 pKa = 4.02LCKK103 pKa = 10.82YY104 pKa = 9.98SFKK107 pKa = 10.29ATHH110 pKa = 6.59CGWVVYY116 pKa = 9.41DD117 pKa = 5.21AKK119 pKa = 10.29PTGNQVTCKK128 pKa = 10.05TIFGYY133 pKa = 9.92PDD135 pKa = 3.55GLVDD139 pKa = 6.11YY140 pKa = 7.46PTTWKK145 pKa = 10.15VARR148 pKa = 11.84DD149 pKa = 3.42VAHH152 pKa = 6.56RR153 pKa = 11.84FVVKK157 pKa = 10.51KK158 pKa = 9.24RR159 pKa = 11.84WTYY162 pKa = 10.6RR163 pKa = 11.84MEE165 pKa = 4.89SNGSNSSKK173 pKa = 10.51DD174 pKa = 3.19WSNGTGIPPCNRR186 pKa = 11.84SVYY189 pKa = 10.15VKK191 pKa = 10.57QFVSKK196 pKa = 10.29LNCRR200 pKa = 11.84TEE202 pKa = 4.0WKK204 pKa = 8.44NTTGGDD210 pKa = 3.41YY211 pKa = 11.46GDD213 pKa = 3.82IKK215 pKa = 11.12GGALYY220 pKa = 10.58VVLAAGQGMEE230 pKa = 3.86HH231 pKa = 6.38MAYY234 pKa = 8.4GTTRR238 pKa = 11.84MYY240 pKa = 10.63FKK242 pKa = 10.96SIGNQQ247 pKa = 3.0

Molecular weight: 27.69 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

998

120

343

249.5

28.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.014 ± 0.697

2.605 ± 0.184

5.01 ± 0.598

4.208 ± 0.417

4.81 ± 0.738

6.613 ± 0.8

2.806 ± 0.605

4.008 ± 0.985

5.311 ± 0.732

6.112 ± 0.72

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.705 ± 0.398

4.008 ± 0.489

6.313 ± 0.742

3.106 ± 0.183

6.613 ± 0.388

8.116 ± 0.579

7.615 ± 0.56

6.613 ± 1.315

2.004 ± 0.136

4.409 ± 0.397
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski