Krasilnikovia cinnamomea

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micromonosporales; Micromonosporaceae; Krasilnikovia

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6517 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q7ZMT7|A0A4Q7ZMT7_9ACTN Uncharacterized protein OS=Krasilnikovia cinnamomea OX=349313 GN=EV385_3508 PE=4 SV=1
MM1 pKa = 7.1TVSFDD6 pKa = 3.7LHH8 pKa = 7.48VLAIDD13 pKa = 4.43PDD15 pKa = 3.93ASDD18 pKa = 3.63DD19 pKa = 3.67AVRR22 pKa = 11.84AMVDD26 pKa = 3.11RR27 pKa = 11.84CQGDD31 pKa = 3.14AHH33 pKa = 7.99AEE35 pKa = 4.14GEE37 pKa = 4.1LDD39 pKa = 3.42QRR41 pKa = 11.84IVDD44 pKa = 4.66FYY46 pKa = 9.97EE47 pKa = 3.96SLRR50 pKa = 11.84RR51 pKa = 11.84RR52 pKa = 11.84YY53 pKa = 9.64PDD55 pKa = 3.86FPPYY59 pKa = 10.17PDD61 pKa = 4.58DD62 pKa = 4.47SPWMSMPLDD71 pKa = 3.49VGVDD75 pKa = 3.87HH76 pKa = 7.16VCMSMSFSSSDD87 pKa = 3.33DD88 pKa = 3.68VIYY91 pKa = 10.65LIFDD95 pKa = 4.45LAQQYY100 pKa = 10.13EE101 pKa = 4.46LTVYY105 pKa = 10.48DD106 pKa = 4.22PQDD109 pKa = 3.62DD110 pKa = 4.19SVARR114 pKa = 11.84PGDD117 pKa = 3.61DD118 pKa = 2.96

Molecular weight: 13.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Q7ZS29|A0A4Q7ZS29_9ACTN Uncharacterized protein OS=Krasilnikovia cinnamomea OX=349313 GN=EV385_5552 PE=4 SV=1
MM1 pKa = 7.72KK2 pKa = 10.37NGTVSGLRR10 pKa = 11.84AQAPRR15 pKa = 11.84RR16 pKa = 11.84ARR18 pKa = 11.84QAQRR22 pKa = 11.84AVRR25 pKa = 11.84NHH27 pKa = 6.59PAPAAGVLALAGAVAAVLLGRR48 pKa = 11.84RR49 pKa = 11.84AAKK52 pKa = 10.1SRR54 pKa = 11.84SARR57 pKa = 11.84KK58 pKa = 9.23RR59 pKa = 11.84RR60 pKa = 11.84LPRR63 pKa = 11.84LLHH66 pKa = 6.11RR67 pKa = 5.13

Molecular weight: 7.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6517

0

6517

2234958

29

9930

342.9

36.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.629 ± 0.057

0.773 ± 0.009

6.062 ± 0.027

4.879 ± 0.03

2.624 ± 0.016

9.251 ± 0.031

2.205 ± 0.014

3.279 ± 0.022

1.726 ± 0.026

10.231 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.665 ± 0.011

1.804 ± 0.02

6.318 ± 0.036

2.889 ± 0.018

8.359 ± 0.035

4.736 ± 0.02

6.24 ± 0.031

8.756 ± 0.028

1.542 ± 0.013

2.031 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski