Halococcus morrhuae DSM 1307

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halococcaceae; Halococcus; Halococcus morrhuae

Average proteome isoelectric point is 4.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3035 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M0MW88|M0MW88_HALMO Fe/B12 periplasmic-binding domain-containing protein OS=Halococcus morrhuae DSM 1307 OX=931277 GN=C448_02528 PE=4 SV=1
MM1 pKa = 7.31SAPWTEE7 pKa = 3.4WDD9 pKa = 4.58HH10 pKa = 6.32IVKK13 pKa = 9.86IDD15 pKa = 3.8PDD17 pKa = 3.54KK18 pKa = 11.54SLVDD22 pKa = 3.55GEE24 pKa = 4.76SYY26 pKa = 11.42EE27 pKa = 4.38DD28 pKa = 3.58VCRR31 pKa = 11.84TGTDD35 pKa = 3.47AIEE38 pKa = 4.23VGGTTGMTEE47 pKa = 4.14EE48 pKa = 4.21KK49 pKa = 9.2MQAVVEE55 pKa = 4.4ACSEE59 pKa = 4.21HH60 pKa = 7.46DD61 pKa = 3.56VPLYY65 pKa = 10.41IEE67 pKa = 4.88PGVDD71 pKa = 2.76ATVVHH76 pKa = 6.68TDD78 pKa = 3.08SLDD81 pKa = 3.54GYY83 pKa = 9.86LIPIVFNAGDD93 pKa = 3.95VSWMTGAHH101 pKa = 6.09KK102 pKa = 10.18EE103 pKa = 3.94WVRR106 pKa = 11.84IDD108 pKa = 5.87DD109 pKa = 4.98GIDD112 pKa = 3.04WARR115 pKa = 11.84TNTEE119 pKa = 3.76AYY121 pKa = 9.34IVLNPDD127 pKa = 3.12SSVATYY133 pKa = 8.36TQANCDD139 pKa = 3.55LDD141 pKa = 5.83AEE143 pKa = 4.56DD144 pKa = 3.49VAAYY148 pKa = 8.22ATIAEE153 pKa = 4.22RR154 pKa = 11.84MFGQEE159 pKa = 3.33IVYY162 pKa = 10.08VEE164 pKa = 3.9YY165 pKa = 10.91SGTFGDD171 pKa = 4.2PEE173 pKa = 3.96IVAAAGDD180 pKa = 4.13ALDD183 pKa = 4.47EE184 pKa = 4.35ATLFYY189 pKa = 11.1GGGIHH194 pKa = 7.71DD195 pKa = 4.55YY196 pKa = 11.32DD197 pKa = 4.04SAHH200 pKa = 6.36EE201 pKa = 4.01MGEE204 pKa = 4.0RR205 pKa = 11.84ADD207 pKa = 3.9TVVVGDD213 pKa = 4.2LVHH216 pKa = 7.49DD217 pKa = 4.38EE218 pKa = 4.4GVDD221 pKa = 3.56AVRR224 pKa = 11.84EE225 pKa = 4.32TVRR228 pKa = 11.84GATDD232 pKa = 3.44ASS234 pKa = 3.68

Molecular weight: 25.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M0N5B9|M0N5B9_HALMO Chlorite dismutase OS=Halococcus morrhuae DSM 1307 OX=931277 GN=C448_00075 PE=4 SV=1
MM1 pKa = 7.89RR2 pKa = 11.84SNSVGWSSARR12 pKa = 11.84TRR14 pKa = 11.84ISVVQIRR21 pKa = 11.84RR22 pKa = 11.84LIWKK26 pKa = 9.2IIQGFSRR33 pKa = 11.84VIQQRR38 pKa = 11.84XSSARR43 pKa = 11.84TRR45 pKa = 11.84ISVVQIRR52 pKa = 11.84RR53 pKa = 11.84LIWKK57 pKa = 9.2IIQGFSRR64 pKa = 11.84VIQQRR69 pKa = 11.84LQEE72 pKa = 4.01QQ73 pKa = 3.38

Molecular weight: 8.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3035

0

3035

843377

27

1867

277.9

30.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.031 ± 0.062

0.743 ± 0.013

8.066 ± 0.053

8.398 ± 0.069

3.424 ± 0.032

8.628 ± 0.048

2.071 ± 0.024

4.45 ± 0.033

1.838 ± 0.025

9.14 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.81 ± 0.018

2.423 ± 0.024

4.554 ± 0.027

2.446 ± 0.022

6.579 ± 0.037

5.602 ± 0.038

6.513 ± 0.039

8.504 ± 0.046

1.122 ± 0.018

2.645 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski