Pediococcus cellicola

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus

Average proteome isoelectric point is 6.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1916 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R2IM36|A0A0R2IM36_9LACO Uncharacterized protein OS=Pediococcus cellicola OX=319652 GN=IV80_GL001407 PE=4 SV=1
MM1 pKa = 7.17PTAKK5 pKa = 10.26VVFATITGNNEE16 pKa = 3.41DD17 pKa = 4.24CADD20 pKa = 4.43IITEE24 pKa = 4.01ALEE27 pKa = 4.21DD28 pKa = 3.81LGVQVDD34 pKa = 4.04EE35 pKa = 5.2SEE37 pKa = 4.62ISQTDD42 pKa = 3.07AAEE45 pKa = 4.19FEE47 pKa = 5.26DD48 pKa = 4.7YY49 pKa = 10.54DD50 pKa = 3.58ICVVVPYY57 pKa = 9.94TYY59 pKa = 10.83DD60 pKa = 3.17EE61 pKa = 4.64GALPEE66 pKa = 4.57EE67 pKa = 4.61GLDD70 pKa = 4.06FYY72 pKa = 11.8EE73 pKa = 4.79EE74 pKa = 5.29LPDD77 pKa = 4.73LDD79 pKa = 4.79LNGKK83 pKa = 8.97IFGVAGSGDD92 pKa = 3.32VFYY95 pKa = 11.54EE96 pKa = 3.73EE97 pKa = 5.46FYY99 pKa = 11.13CVAVDD104 pKa = 3.75AFGKK108 pKa = 10.42AFQKK112 pKa = 10.86AHH114 pKa = 6.74ASQGAEE120 pKa = 3.49PVKK123 pKa = 10.73INLAPEE129 pKa = 4.23SEE131 pKa = 4.23EE132 pKa = 5.86DD133 pKa = 3.85LAQLDD138 pKa = 4.05TFAKK142 pKa = 10.21KK143 pKa = 10.52LVDD146 pKa = 3.67SYY148 pKa = 11.58EE149 pKa = 4.22AAQKK153 pKa = 10.65

Molecular weight: 16.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R2IT90|A0A0R2IT90_9LACO ABC transporter ATP-binding protein OS=Pediococcus cellicola OX=319652 GN=IV80_GL001317 PE=4 SV=1
MM1 pKa = 8.17DD2 pKa = 5.37EE3 pKa = 5.32IKK5 pKa = 10.7RR6 pKa = 11.84QLTKK10 pKa = 10.62ASKK13 pKa = 9.12ATRR16 pKa = 11.84QDD18 pKa = 4.15RR19 pKa = 11.84YY20 pKa = 10.22GKK22 pKa = 9.23WIAFICTFLIGLLVVSIFYY41 pKa = 10.78LVASKK46 pKa = 11.08GLATFFRR53 pKa = 11.84GHH55 pKa = 5.99ISLWDD60 pKa = 3.89FLTHH64 pKa = 6.53QDD66 pKa = 3.47WNPGQVSKK74 pKa = 11.5NGVPSVGALPMIVGSFSVTVLSAILATPFAISMALFMTEE113 pKa = 3.79IAPKK117 pKa = 9.75RR118 pKa = 11.84GQRR121 pKa = 11.84FLQPVIEE128 pKa = 4.46LLVGIPSVVYY138 pKa = 9.81GFVGLTIIVPVIRR151 pKa = 11.84AIFGGTGFGILAGTLVLFVMVLPTITSMYY180 pKa = 9.54VDD182 pKa = 3.92SLRR185 pKa = 11.84AVPRR189 pKa = 11.84FYY191 pKa = 11.09RR192 pKa = 11.84EE193 pKa = 3.35AALALGATRR202 pKa = 11.84WQSIYY207 pKa = 10.86KK208 pKa = 9.46VVLRR212 pKa = 11.84ASIPGLLTAIIFGMARR228 pKa = 11.84AFGEE232 pKa = 4.03ALAVQMVIGNASLLPHH248 pKa = 6.44NLISPASTLTSVLTTGIGNTVMGTLPNNALWSLALILLLMSLGFNLLVRR297 pKa = 11.84LIGRR301 pKa = 11.84QGRR304 pKa = 11.84FTKK307 pKa = 10.64

Molecular weight: 33.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1916

0

1916

585870

50

3535

305.8

34.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.662 ± 0.053

0.456 ± 0.012

5.499 ± 0.064

5.308 ± 0.061

4.478 ± 0.051

6.567 ± 0.053

2.288 ± 0.029

7.272 ± 0.063

6.861 ± 0.054

9.819 ± 0.078

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.651 ± 0.03

4.918 ± 0.053

3.514 ± 0.031

4.724 ± 0.049

3.919 ± 0.04

6.061 ± 0.059

6.131 ± 0.058

7.242 ± 0.045

1.024 ± 0.021

3.606 ± 0.041
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski