Mustela putorius papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Taupapillomavirus; Taupapillomavirus 4

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|T1YE43|T1YE43_9PAPI Minor capsid protein L2 OS=Mustela putorius papillomavirus 1 OX=2259540 GN=L2 PE=3 SV=1
MM1 pKa = 7.58PASTPPRR8 pKa = 11.84GTGPFYY14 pKa = 10.54PLLLDD19 pKa = 3.81VVAEE23 pKa = 4.13AGGPPEE29 pKa = 4.51EE30 pKa = 5.12DD31 pKa = 3.79EE32 pKa = 4.8EE33 pKa = 4.33PAAPVGPHH41 pKa = 6.5PVPPPIPPPPPPPLPPMPPINEE63 pKa = 4.18GEE65 pKa = 3.99EE66 pKa = 4.45DD67 pKa = 3.62EE68 pKa = 5.88DD69 pKa = 4.93EE70 pKa = 4.28EE71 pKa = 5.47DD72 pKa = 4.72EE73 pKa = 4.26EE74 pKa = 5.87DD75 pKa = 3.86EE76 pKa = 4.81EE77 pKa = 4.59EE78 pKa = 4.76DD79 pKa = 5.13SEE81 pKa = 5.07TEE83 pKa = 4.38DD84 pKa = 3.45EE85 pKa = 4.5SQEE88 pKa = 3.85GRR90 pKa = 11.84HH91 pKa = 6.15PDD93 pKa = 3.27SLLASLMQTWGDD105 pKa = 3.75DD106 pKa = 3.92LDD108 pKa = 4.26RR109 pKa = 11.84LQDD112 pKa = 4.03KK113 pKa = 11.07INGEE117 pKa = 4.06LDD119 pKa = 2.95KK120 pKa = 11.27LRR122 pKa = 11.84RR123 pKa = 11.84TVGLPPRR130 pKa = 11.84SPPSS134 pKa = 3.25

Molecular weight: 14.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|T1YEN9|T1YEN9_9PAPI Major capsid protein L1 OS=Mustela putorius papillomavirus 1 OX=2259540 GN=L1 PE=3 SV=1
MM1 pKa = 7.46IVGNNYY7 pKa = 9.41CVYY10 pKa = 11.11VLTCTKK16 pKa = 9.82KK17 pKa = 8.25GTYY20 pKa = 9.13IRR22 pKa = 11.84SCKK25 pKa = 9.73EE26 pKa = 3.44VTLIAHH32 pKa = 6.07MAKK35 pKa = 8.59PTTVLGLSRR44 pKa = 11.84RR45 pKa = 11.84LQQPVEE51 pKa = 4.43RR52 pKa = 11.84ILIKK56 pKa = 10.7CIFCEE61 pKa = 4.95LPLTNLDD68 pKa = 3.44KK69 pKa = 11.62QEE71 pKa = 4.09FDD73 pKa = 3.48KK74 pKa = 11.37KK75 pKa = 10.87ALNLVWYY82 pKa = 9.27GNFVFGVCSYY92 pKa = 11.09CCYY95 pKa = 10.39KK96 pKa = 10.64KK97 pKa = 10.86SFEE100 pKa = 4.4DD101 pKa = 3.99CVKK104 pKa = 9.7NTAICLEE111 pKa = 4.21GDD113 pKa = 3.44GVEE116 pKa = 5.32AITNVPLQRR125 pKa = 11.84LVVRR129 pKa = 11.84CQHH132 pKa = 5.93CMSVLSFLEE141 pKa = 3.77KK142 pKa = 10.57LNCVVRR148 pKa = 11.84KK149 pKa = 10.04SPFILVRR156 pKa = 11.84TCWRR160 pKa = 11.84NKK162 pKa = 9.99CNSCFRR168 pKa = 11.84NDD170 pKa = 2.82WW171 pKa = 3.42

Molecular weight: 19.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2753

97

595

344.1

38.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.504 ± 0.456

2.761 ± 0.652

5.194 ± 0.571

7.011 ± 0.643

4.686 ± 0.666

8.681 ± 1.525

1.562 ± 0.185

4.395 ± 0.756

4.904 ± 0.727

7.991 ± 0.839

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.671 ± 0.35

4.831 ± 0.651

6.538 ± 1.189

3.959 ± 0.526

5.739 ± 0.704

8.209 ± 0.91

6.684 ± 0.706

6.175 ± 0.663

1.562 ± 0.487

2.942 ± 0.315
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski