Adhaeribacter soli

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Hymenobacteraceae; Adhaeribacter

Average proteome isoelectric point is 6.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3831 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5N1INY4|A0A5N1INY4_9BACT DNA repair protein RecN OS=Adhaeribacter soli OX=2607655 GN=recN PE=3 SV=1
MM1 pKa = 7.33IWITGNIEE9 pKa = 3.76LLKK12 pKa = 10.84ASDD15 pKa = 3.93YY16 pKa = 10.89IIYY19 pKa = 7.92NTTKK23 pKa = 10.07YY24 pKa = 10.51RR25 pKa = 11.84SAQEE29 pKa = 4.37TEE31 pKa = 3.84VHH33 pKa = 6.58DD34 pKa = 4.07PVIISGDD41 pKa = 3.63NLIMDD46 pKa = 4.4EE47 pKa = 4.49EE48 pKa = 4.53KK49 pKa = 11.24SNTSDD54 pKa = 5.38DD55 pKa = 3.68DD56 pKa = 3.84TGNNGQLYY64 pKa = 9.56YY65 pKa = 10.08EE66 pKa = 3.96FHH68 pKa = 6.41VLSEE72 pKa = 4.42GEE74 pKa = 3.86PTDD77 pKa = 3.22RR78 pKa = 11.84VLIVYY83 pKa = 10.12HH84 pKa = 5.81DD85 pKa = 4.18TIKK88 pKa = 11.07NEE90 pKa = 3.95YY91 pKa = 8.8TGWCAEE97 pKa = 4.25DD98 pKa = 3.23

Molecular weight: 11.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5N1IX26|A0A5N1IX26_9BACT Uncharacterized protein OS=Adhaeribacter soli OX=2607655 GN=F0P94_08605 PE=4 SV=1
MM1 pKa = 7.33LCYY4 pKa = 10.52RR5 pKa = 11.84NMQDD9 pKa = 2.88FCSIGMRR16 pKa = 11.84FMANQIYY23 pKa = 9.87QPTKK27 pKa = 8.92VAGTRR32 pKa = 11.84MLFTMTMTMIVVMAMTCFLMRR53 pKa = 11.84AMVVMMWQHH62 pKa = 5.47NMRR65 pKa = 11.84LHH67 pKa = 4.33YY68 pKa = 10.66HH69 pKa = 6.19KK70 pKa = 10.79GKK72 pKa = 10.28KK73 pKa = 8.69KK74 pKa = 10.24KK75 pKa = 10.12KK76 pKa = 8.98RR77 pKa = 3.49

Molecular weight: 9.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3831

0

3831

1363969

26

4629

356.0

39.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.957 ± 0.043

0.799 ± 0.016

4.689 ± 0.03

6.052 ± 0.059

4.967 ± 0.034

7.027 ± 0.052

1.774 ± 0.02

6.324 ± 0.039

6.412 ± 0.058

9.837 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.141 ± 0.025

5.554 ± 0.048

4.303 ± 0.03

3.956 ± 0.031

4.152 ± 0.033

6.25 ± 0.05

6.366 ± 0.083

6.494 ± 0.034

1.122 ± 0.015

3.824 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski