Dermabacter sp. HFH0086

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Dermabacteraceae; Dermabacter; unclassified Dermabacter

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2120 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S3YAR8|S3YAR8_9MICO Uncharacterized protein OS=Dermabacter sp. HFH0086 OX=1203568 GN=HMPREF1484_01977 PE=4 SV=1
MM1 pKa = 7.2PTGPKK6 pKa = 8.71HH7 pKa = 5.43WKK9 pKa = 7.22HH10 pKa = 5.7TEE12 pKa = 3.93VGDD15 pKa = 4.05GTDD18 pKa = 3.51DD19 pKa = 3.16TWAEE23 pKa = 4.11EE24 pKa = 4.37CRR26 pKa = 11.84CMIGEE31 pKa = 4.11DD32 pKa = 3.88HH33 pKa = 6.92YY34 pKa = 11.95VGADD38 pKa = 3.29SPMSEE43 pKa = 4.29MLSEE47 pKa = 4.12VDD49 pKa = 5.21AEE51 pKa = 4.83DD52 pKa = 4.27IYY54 pKa = 11.31LSSGMDD60 pKa = 3.42PDD62 pKa = 3.71YY63 pKa = 11.43DD64 pKa = 3.73FRR66 pKa = 6.61

Molecular weight: 7.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S3ZBV9|S3ZBV9_9MICO Aamy domain-containing protein OS=Dermabacter sp. HFH0086 OX=1203568 GN=HMPREF1484_00147 PE=4 SV=1
MM1 pKa = 7.51TKK3 pKa = 9.09RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 10.04KK16 pKa = 8.86HH17 pKa = 4.37GFRR20 pKa = 11.84ARR22 pKa = 11.84MSTRR26 pKa = 11.84AGRR29 pKa = 11.84AIINARR35 pKa = 11.84RR36 pKa = 11.84SKK38 pKa = 10.75GRR40 pKa = 11.84ASLSAA45 pKa = 3.83

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2120

0

2120

711070

28

2235

335.4

36.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.126 ± 0.068

0.675 ± 0.014

5.861 ± 0.043

6.82 ± 0.056

3.318 ± 0.038

8.41 ± 0.046

2.212 ± 0.025

4.836 ± 0.037

3.237 ± 0.048

9.727 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.022 ± 0.021

2.562 ± 0.032

5.069 ± 0.044

2.745 ± 0.031

6.784 ± 0.065

6.174 ± 0.034

6.047 ± 0.047

7.962 ± 0.045

1.32 ± 0.021

2.094 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski