Amino acid dipepetide frequency for Hubei odonate virus 11

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.752AlaAla: 2.752 ± 1.394
0.612AlaCys: 0.612 ± 0.326
2.141AlaAsp: 2.141 ± 0.515
2.752AlaGlu: 2.752 ± 1.048
1.835AlaPhe: 1.835 ± 0.467
2.752AlaGly: 2.752 ± 1.394
2.141AlaHis: 2.141 ± 0.482
3.364AlaIle: 3.364 ± 1.351
2.141AlaLys: 2.141 ± 0.515
6.422AlaLeu: 6.422 ± 1.047
0.612AlaMet: 0.612 ± 0.359
1.529AlaAsn: 1.529 ± 1.641
1.529AlaPro: 1.529 ± 0.176
2.752AlaGln: 2.752 ± 0.523
0.612AlaArg: 0.612 ± 0.326
5.505AlaSer: 5.505 ± 1.243
2.446AlaThr: 2.446 ± 0.454
2.752AlaVal: 2.752 ± 0.621
1.223AlaTrp: 1.223 ± 0.322
4.587AlaTyr: 4.587 ± 1.443
0.0AlaXaa: 0.0 ± 0.0
Cys
1.529CysAla: 1.529 ± 0.816
0.306CysCys: 0.306 ± 0.163
3.058CysAsp: 3.058 ± 0.771
1.529CysGlu: 1.529 ± 0.385
1.223CysPhe: 1.223 ± 0.653
0.306CysGly: 0.306 ± 0.417
0.612CysHis: 0.612 ± 0.326
1.529CysIle: 1.529 ± 0.507
3.364CysLys: 3.364 ± 0.845
3.058CysLeu: 3.058 ± 1.231
0.306CysMet: 0.306 ± 0.417
1.835CysAsn: 1.835 ± 0.979
1.223CysPro: 1.223 ± 0.653
0.306CysGln: 0.306 ± 0.163
0.917CysArg: 0.917 ± 0.985
1.835CysSer: 1.835 ± 0.887
0.612CysThr: 0.612 ± 0.326
0.917CysVal: 0.917 ± 0.233
0.0CysTrp: 0.0 ± 0.0
2.141CysTyr: 2.141 ± 0.482
0.0CysXaa: 0.0 ± 0.0
Asp
3.058AspAla: 3.058 ± 0.497
1.223AspCys: 1.223 ± 0.591
3.058AspAsp: 3.058 ± 0.999
4.587AspGlu: 4.587 ± 0.936
0.917AspPhe: 0.917 ± 0.479
2.141AspGly: 2.141 ± 0.772
0.612AspHis: 0.612 ± 0.326
3.364AspIle: 3.364 ± 1.165
2.446AspLys: 2.446 ± 0.83
5.505AspLeu: 5.505 ± 1.595
0.612AspMet: 0.612 ± 0.326
3.364AspAsn: 3.364 ± 0.909
2.446AspPro: 2.446 ± 0.454
2.446AspGln: 2.446 ± 0.454
1.835AspArg: 1.835 ± 0.525
3.67AspSer: 3.67 ± 0.792
1.223AspThr: 1.223 ± 0.653
4.587AspVal: 4.587 ± 0.034
0.306AspTrp: 0.306 ± 0.163
2.446AspTyr: 2.446 ± 0.83
0.0AspXaa: 0.0 ± 0.0
Glu
2.446GluAla: 2.446 ± 1.436
1.529GluCys: 1.529 ± 0.507
2.446GluAsp: 2.446 ± 1.879
4.281GluGlu: 4.281 ± 0.985
2.446GluPhe: 2.446 ± 0.364
2.752GluGly: 2.752 ± 0.492
0.917GluHis: 0.917 ± 0.479
3.67GluIle: 3.67 ± 1.229
2.446GluLys: 2.446 ± 0.83
5.505GluLeu: 5.505 ± 1.264
0.612GluMet: 0.612 ± 0.326
2.141GluAsn: 2.141 ± 1.033
1.223GluPro: 1.223 ± 0.823
2.141GluGln: 2.141 ± 0.482
2.752GluArg: 2.752 ± 0.7
5.199GluSer: 5.199 ± 1.817
3.364GluThr: 3.364 ± 0.748
4.281GluVal: 4.281 ± 0.14
0.612GluTrp: 0.612 ± 0.296
2.446GluTyr: 2.446 ± 0.205
0.0GluXaa: 0.0 ± 0.0
Phe
2.141PheAla: 2.141 ± 0.907
0.306PheCys: 0.306 ± 0.163
2.752PheAsp: 2.752 ± 0.523
2.752PheGlu: 2.752 ± 1.469
0.917PhePhe: 0.917 ± 1.25
2.446PheGly: 2.446 ± 0.732
0.306PheHis: 0.306 ± 0.442
3.976PheIle: 3.976 ± 1.364
3.364PheLys: 3.364 ± 0.788
4.281PheLeu: 4.281 ± 0.892
0.0PheMet: 0.0 ± 0.0
3.364PheAsn: 3.364 ± 0.748
1.223PhePro: 1.223 ± 0.718
0.306PheGln: 0.306 ± 0.163
3.058PheArg: 3.058 ± 0.352
4.281PheSer: 4.281 ± 0.696
0.612PheThr: 0.612 ± 0.326
3.058PheVal: 3.058 ± 0.209
1.223PheTrp: 1.223 ± 0.591
0.917PheTyr: 0.917 ± 0.49
0.0PheXaa: 0.0 ± 0.0
Gly
1.835GlyAla: 1.835 ± 1.577
1.223GlyCys: 1.223 ± 0.274
1.835GlyAsp: 1.835 ± 0.525
1.529GlyGlu: 1.529 ± 1.298
5.505GlyPhe: 5.505 ± 1.292
2.752GlyGly: 2.752 ± 0.447
1.223GlyHis: 1.223 ± 0.653
2.752GlyIle: 2.752 ± 0.621
2.752GlyLys: 2.752 ± 0.955
5.199GlyLeu: 5.199 ± 2.794
0.306GlyMet: 0.306 ± 0.417
1.835GlyAsn: 1.835 ± 0.107
1.529GlyPro: 1.529 ± 0.176
2.141GlyGln: 2.141 ± 0.675
2.752GlyArg: 2.752 ± 0.447
3.67GlySer: 3.67 ± 1.007
3.976GlyThr: 3.976 ± 0.917
3.058GlyVal: 3.058 ± 0.209
0.612GlyTrp: 0.612 ± 0.359
3.058GlyTyr: 3.058 ± 0.706
0.0GlyXaa: 0.0 ± 0.0
His
1.529HisAla: 1.529 ± 1.214
1.223HisCys: 1.223 ± 0.274
1.529HisAsp: 1.529 ± 0.385
0.917HisGlu: 0.917 ± 0.233
1.223HisPhe: 1.223 ± 0.653
0.917HisGly: 0.917 ± 0.49
0.612HisHis: 0.612 ± 0.326
0.612HisIle: 0.612 ± 0.296
1.529HisLys: 1.529 ± 0.385
2.446HisLeu: 2.446 ± 0.732
0.306HisMet: 0.306 ± 0.163
1.223HisAsn: 1.223 ± 0.322
0.917HisPro: 0.917 ± 0.49
1.223HisGln: 1.223 ± 0.322
1.223HisArg: 1.223 ± 0.653
1.223HisSer: 1.223 ± 0.274
1.529HisThr: 1.529 ± 0.176
0.917HisVal: 0.917 ± 0.49
0.0HisTrp: 0.0 ± 0.0
1.835HisTyr: 1.835 ± 0.107
0.0HisXaa: 0.0 ± 0.0
Ile
4.893IleAla: 4.893 ± 1.288
0.917IleCys: 0.917 ± 0.788
3.364IleAsp: 3.364 ± 0.961
5.199IleGlu: 5.199 ± 0.877
3.058IlePhe: 3.058 ± 0.352
4.587IleGly: 4.587 ± 0.936
0.917IleHis: 0.917 ± 0.233
5.199IleIle: 5.199 ± 2.494
5.81IleLys: 5.81 ± 0.92
6.422IleLeu: 6.422 ± 0.639
3.364IleMet: 3.364 ± 0.628
5.505IleAsn: 5.505 ± 0.45
2.752IlePro: 2.752 ± 0.447
2.752IleGln: 2.752 ± 0.648
3.058IleArg: 3.058 ± 1.053
5.199IleSer: 5.199 ± 1.186
4.587IleThr: 4.587 ± 1.522
3.058IleVal: 3.058 ± 0.771
0.612IleTrp: 0.612 ± 0.296
3.67IleTyr: 3.67 ± 0.709
0.0IleXaa: 0.0 ± 0.0
Lys
2.141LysAla: 2.141 ± 0.515
1.835LysCys: 1.835 ± 0.525
3.67LysAsp: 3.67 ± 0.821
4.587LysGlu: 4.587 ± 0.554
3.364LysPhe: 3.364 ± 0.961
3.67LysGly: 3.67 ± 1.361
0.917LysHis: 0.917 ± 0.233
4.893LysIle: 4.893 ± 0.19
2.752LysLys: 2.752 ± 0.7
6.422LysLeu: 6.422 ± 1.005
1.223LysMet: 1.223 ± 0.322
1.835LysAsn: 1.835 ± 0.629
2.752LysPro: 2.752 ± 0.492
1.223LysGln: 1.223 ± 0.274
2.752LysArg: 2.752 ± 0.621
3.058LysSer: 3.058 ± 0.771
5.505LysThr: 5.505 ± 1.228
3.976LysVal: 3.976 ± 0.842
1.529LysTrp: 1.529 ± 0.385
2.141LysTyr: 2.141 ± 0.772
0.0LysXaa: 0.0 ± 0.0
Leu
5.199LeuAla: 5.199 ± 1.402
3.058LeuCys: 3.058 ± 0.706
6.728LeuAsp: 6.728 ± 1.345
3.67LeuGlu: 3.67 ± 0.709
3.976LeuPhe: 3.976 ± 0.295
4.893LeuGly: 4.893 ± 0.728
1.223LeuHis: 1.223 ± 0.653
7.339LeuIle: 7.339 ± 0.429
5.81LeuLys: 5.81 ± 0.92
13.15LeuLeu: 13.15 ± 0.801
3.058LeuMet: 3.058 ± 0.209
4.893LeuAsn: 4.893 ± 2.115
4.587LeuPro: 4.587 ± 2.029
4.587LeuGln: 4.587 ± 1.107
7.034LeuArg: 7.034 ± 1.94
9.48LeuSer: 9.48 ± 1.69
7.951LeuThr: 7.951 ± 1.313
5.505LeuVal: 5.505 ± 1.028
1.223LeuTrp: 1.223 ± 0.395
3.058LeuTyr: 3.058 ± 1.038
0.0LeuXaa: 0.0 ± 0.0
Met
0.917MetAla: 0.917 ± 0.479
0.917MetCys: 0.917 ± 0.49
0.0MetAsp: 0.0 ± 0.0
1.223MetGlu: 1.223 ± 0.395
0.306MetPhe: 0.306 ± 0.417
1.223MetGly: 1.223 ± 0.823
0.917MetHis: 0.917 ± 0.233
1.223MetIle: 1.223 ± 0.653
1.223MetLys: 1.223 ± 0.322
1.835MetLeu: 1.835 ± 0.503
0.306MetMet: 0.306 ± 0.163
1.529MetAsn: 1.529 ± 0.663
0.612MetPro: 0.612 ± 0.326
0.917MetGln: 0.917 ± 0.479
1.223MetArg: 1.223 ± 0.653
1.223MetSer: 1.223 ± 0.274
1.223MetThr: 1.223 ± 0.274
1.223MetVal: 1.223 ± 0.653
0.306MetTrp: 0.306 ± 0.163
3.058MetTyr: 3.058 ± 0.352
0.0MetXaa: 0.0 ± 0.0
Asn
2.752AsnAla: 2.752 ± 0.523
1.835AsnCys: 1.835 ± 0.629
3.364AsnAsp: 3.364 ± 0.353
2.752AsnGlu: 2.752 ± 0.523
2.752AsnPhe: 2.752 ± 0.955
2.141AsnGly: 2.141 ± 0.482
1.529AsnHis: 1.529 ± 0.507
4.587AsnIle: 4.587 ± 0.936
2.752AsnLys: 2.752 ± 0.988
5.199AsnLeu: 5.199 ± 0.886
0.612AsnMet: 0.612 ± 0.326
2.446AsnAsn: 2.446 ± 1.118
1.835AsnPro: 1.835 ± 0.503
2.141AsnGln: 2.141 ± 0.675
1.529AsnArg: 1.529 ± 0.996
3.364AsnSer: 3.364 ± 0.59
2.446AsnThr: 2.446 ± 0.76
4.587AsnVal: 4.587 ± 0.528
0.0AsnTrp: 0.0 ± 0.0
2.446AsnTyr: 2.446 ± 0.79
0.0AsnXaa: 0.0 ± 0.0
Pro
2.141ProAla: 2.141 ± 1.281
0.306ProCys: 0.306 ± 0.163
1.529ProAsp: 1.529 ± 0.737
3.058ProGlu: 3.058 ± 1.36
1.529ProPhe: 1.529 ± 0.816
1.529ProGly: 1.529 ± 0.176
0.917ProHis: 0.917 ± 0.34
4.281ProIle: 4.281 ± 0.475
1.529ProLys: 1.529 ± 0.816
2.141ProLeu: 2.141 ± 0.213
0.612ProMet: 0.612 ± 0.326
3.058ProAsn: 3.058 ± 0.497
2.446ProPro: 2.446 ± 0.364
2.752ProGln: 2.752 ± 1.075
2.446ProArg: 2.446 ± 1.014
2.446ProSer: 2.446 ± 1.19
2.141ProThr: 2.141 ± 0.797
2.446ProVal: 2.446 ± 0.205
0.917ProTrp: 0.917 ± 0.788
1.223ProTyr: 1.223 ± 0.591
0.0ProXaa: 0.0 ± 0.0
Gln
1.835GlnAla: 1.835 ± 0.979
0.917GlnCys: 0.917 ± 0.233
1.529GlnAsp: 1.529 ± 0.385
2.446GlnGlu: 2.446 ± 0.364
0.612GlnPhe: 0.612 ± 0.359
1.529GlnGly: 1.529 ± 0.507
0.917GlnHis: 0.917 ± 0.479
3.058GlnIle: 3.058 ± 0.683
1.223GlnLys: 1.223 ± 0.274
4.893GlnLeu: 4.893 ± 0.41
0.612GlnMet: 0.612 ± 0.211
1.835GlnAsn: 1.835 ± 0.614
0.306GlnPro: 0.306 ± 0.163
1.223GlnGln: 1.223 ± 0.823
2.141GlnArg: 2.141 ± 0.213
5.199GlnSer: 5.199 ± 1.379
3.058GlnThr: 3.058 ± 0.811
2.446GlnVal: 2.446 ± 0.547
0.306GlnTrp: 0.306 ± 0.163
1.529GlnTyr: 1.529 ± 0.385
0.0GlnXaa: 0.0 ± 0.0
Arg
2.752ArgAla: 2.752 ± 0.621
0.612ArgCys: 0.612 ± 0.834
1.223ArgAsp: 1.223 ± 0.322
1.835ArgGlu: 1.835 ± 1.059
0.917ArgPhe: 0.917 ± 0.34
2.446ArgGly: 2.446 ± 1.497
1.223ArgHis: 1.223 ± 0.274
5.505ArgIle: 5.505 ± 0.795
2.752ArgLys: 2.752 ± 0.523
4.893ArgLeu: 4.893 ± 1.285
1.835ArgMet: 1.835 ± 0.327
1.529ArgAsn: 1.529 ± 0.737
1.223ArgPro: 1.223 ± 0.873
1.223ArgGln: 1.223 ± 0.322
2.446ArgArg: 2.446 ± 0.205
5.505ArgSer: 5.505 ± 1.045
3.976ArgThr: 3.976 ± 1.277
3.67ArgVal: 3.67 ± 0.215
0.0ArgTrp: 0.0 ± 0.0
1.835ArgTyr: 1.835 ± 0.629
0.0ArgXaa: 0.0 ± 0.0
Ser
4.281SerAla: 4.281 ± 0.553
3.058SerCys: 3.058 ± 0.771
3.058SerAsp: 3.058 ± 1.303
3.058SerGlu: 3.058 ± 1.014
4.281SerPhe: 4.281 ± 1.783
4.587SerGly: 4.587 ± 1.089
3.67SerHis: 3.67 ± 0.821
4.893SerIle: 4.893 ± 1.886
6.422SerLys: 6.422 ± 1.061
8.563SerLeu: 8.563 ± 2.335
1.835SerMet: 1.835 ± 0.958
4.893SerAsn: 4.893 ± 1.153
2.446SerPro: 2.446 ± 0.205
3.058SerGln: 3.058 ± 2.428
2.141SerArg: 2.141 ± 1.143
7.645SerSer: 7.645 ± 1.365
3.364SerThr: 3.364 ± 1.455
5.505SerVal: 5.505 ± 0.827
0.917SerTrp: 0.917 ± 0.233
4.587SerTyr: 4.587 ± 0.595
0.0SerXaa: 0.0 ± 0.0
Thr
2.141ThrAla: 2.141 ± 0.213
2.446ThrCys: 2.446 ± 0.83
1.529ThrAsp: 1.529 ± 0.816
1.835ThrGlu: 1.835 ± 0.107
2.446ThrPhe: 2.446 ± 0.83
2.141ThrGly: 2.141 ± 1.467
1.529ThrHis: 1.529 ± 0.663
5.199ThrIle: 5.199 ± 2.278
3.976ThrLys: 3.976 ± 0.302
8.563ThrLeu: 8.563 ± 1.23
1.223ThrMet: 1.223 ± 0.653
2.752ThrAsn: 2.752 ± 0.7
3.058ThrPro: 3.058 ± 1.279
2.141ThrGln: 2.141 ± 0.515
2.752ThrArg: 2.752 ± 1.048
4.893ThrSer: 4.893 ± 2.931
5.199ThrThr: 5.199 ± 0.33
3.058ThrVal: 3.058 ± 0.811
1.223ThrTrp: 1.223 ± 0.395
2.752ThrTyr: 2.752 ± 1.09
0.0ThrXaa: 0.0 ± 0.0
Val
3.058ValAla: 3.058 ± 1.325
1.223ValCys: 1.223 ± 0.653
4.893ValAsp: 4.893 ± 1.16
2.752ValGlu: 2.752 ± 1.176
2.446ValPhe: 2.446 ± 0.547
1.529ValGly: 1.529 ± 0.816
1.529ValHis: 1.529 ± 0.385
3.364ValIle: 3.364 ± 0.748
5.199ValLys: 5.199 ± 0.66
6.116ValLeu: 6.116 ± 0.98
2.141ValMet: 2.141 ± 0.412
2.446ValAsn: 2.446 ± 1.306
4.281ValPro: 4.281 ± 0.14
1.835ValGln: 1.835 ± 0.979
3.364ValArg: 3.364 ± 0.59
6.422ValSer: 6.422 ± 0.095
3.67ValThr: 3.67 ± 0.787
4.587ValVal: 4.587 ± 0.547
0.306ValTrp: 0.306 ± 0.163
2.752ValTyr: 2.752 ± 0.621
0.0ValXaa: 0.0 ± 0.0
Trp
1.223TrpAla: 1.223 ± 0.395
0.612TrpCys: 0.612 ± 0.326
0.612TrpAsp: 0.612 ± 0.296
0.917TrpGlu: 0.917 ± 0.233
0.306TrpPhe: 0.306 ± 0.417
0.917TrpGly: 0.917 ± 0.479
0.0TrpHis: 0.0 ± 0.0
0.612TrpIle: 0.612 ± 0.359
0.306TrpLys: 0.306 ± 0.417
1.223TrpLeu: 1.223 ± 0.395
0.0TrpMet: 0.0 ± 0.0
0.306TrpAsn: 0.306 ± 0.163
0.306TrpPro: 0.306 ± 0.163
0.306TrpGln: 0.306 ± 0.417
0.612TrpArg: 0.612 ± 0.326
0.917TrpSer: 0.917 ± 0.34
0.917TrpThr: 0.917 ± 0.34
0.612TrpVal: 0.612 ± 0.326
0.306TrpTrp: 0.306 ± 0.163
0.917TrpTyr: 0.917 ± 0.233
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.835TyrAla: 1.835 ± 0.107
2.446TyrCys: 2.446 ± 1.306
1.529TyrAsp: 1.529 ± 0.385
1.529TyrGlu: 1.529 ± 1.534
1.223TyrPhe: 1.223 ± 0.653
4.281TyrGly: 4.281 ± 0.696
1.223TyrHis: 1.223 ± 0.653
5.505TyrIle: 5.505 ± 1.228
2.446TyrLys: 2.446 ± 0.205
4.587TyrLeu: 4.587 ± 0.554
1.529TyrMet: 1.529 ± 0.385
2.752TyrAsn: 2.752 ± 0.7
2.752TyrPro: 2.752 ± 0.492
2.141TyrGln: 2.141 ± 0.772
3.058TyrArg: 3.058 ± 0.913
1.529TyrSer: 1.529 ± 0.663
3.058TyrThr: 3.058 ± 0.792
3.67TyrVal: 3.67 ± 0.509
0.306TyrTrp: 0.306 ± 0.163
1.223TyrTyr: 1.223 ± 0.395
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 3 proteins (3271 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski