Amino acid dipepetide frequency for Sclerotinia sclerotiorum fusarivirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
0.844AlaAla: 0.844 ± 0.427
0.0AlaCys: 0.0 ± 0.0
1.266AlaAsp: 1.266 ± 0.38
1.266AlaGlu: 1.266 ± 0.38
1.688AlaPhe: 1.688 ± 0.93
2.955AlaGly: 2.955 ± 1.191
0.844AlaHis: 0.844 ± 0.465
0.844AlaIle: 0.844 ± 0.465
1.688AlaLys: 1.688 ± 0.854
5.488AlaLeu: 5.488 ± 1.861
1.688AlaMet: 1.688 ± 2.16
2.111AlaAsn: 2.111 ± 1.963
3.377AlaPro: 3.377 ± 1.143
2.955AlaGln: 2.955 ± 0.816
1.266AlaArg: 1.266 ± 0.698
2.955AlaSer: 2.955 ± 2.047
2.111AlaThr: 2.111 ± 1.403
3.799AlaVal: 3.799 ± 2.251
0.844AlaTrp: 0.844 ± 0.465
1.688AlaTyr: 1.688 ± 0.464
0.0AlaXaa: 0.0 ± 0.0
Cys
0.422CysAla: 0.422 ± 0.233
0.0CysCys: 0.0 ± 0.0
1.266CysAsp: 1.266 ± 0.38
0.0CysGlu: 0.0 ± 0.0
0.844CysPhe: 0.844 ± 0.465
0.844CysGly: 0.844 ± 2.303
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
2.111CysLys: 2.111 ± 3.552
0.844CysLeu: 0.844 ± 0.465
0.422CysMet: 0.422 ± 0.233
0.844CysAsn: 0.844 ± 0.427
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
0.844CysSer: 0.844 ± 0.465
0.422CysThr: 0.422 ± 0.233
0.844CysVal: 0.844 ± 0.427
0.0CysTrp: 0.0 ± 0.0
0.844CysTyr: 0.844 ± 0.465
0.0CysXaa: 0.0 ± 0.0
Asp
1.688AspAla: 1.688 ± 0.464
1.266AspCys: 1.266 ± 0.698
2.533AspAsp: 2.533 ± 1.966
2.955AspGlu: 2.955 ± 1.038
2.111AspPhe: 2.111 ± 0.628
2.955AspGly: 2.955 ± 0.816
0.422AspHis: 0.422 ± 0.573
4.643AspIle: 4.643 ± 1.272
1.266AspLys: 1.266 ± 0.38
4.643AspLeu: 4.643 ± 1.272
0.844AspMet: 0.844 ± 0.465
1.688AspAsn: 1.688 ± 2.16
2.955AspPro: 2.955 ± 1.038
1.688AspGln: 1.688 ± 0.93
2.955AspArg: 2.955 ± 1.191
3.799AspSer: 3.799 ± 1.141
1.688AspThr: 1.688 ± 1.551
5.065AspVal: 5.065 ± 1.522
2.533AspTrp: 2.533 ± 0.761
1.266AspTyr: 1.266 ± 0.38
0.0AspXaa: 0.0 ± 0.0
Glu
1.266GluAla: 1.266 ± 0.38
0.422GluCys: 0.422 ± 0.573
2.955GluAsp: 2.955 ± 0.816
2.533GluGlu: 2.533 ± 1.281
3.377GluPhe: 3.377 ± 1.861
3.377GluGly: 3.377 ± 0.928
0.844GluHis: 0.844 ± 0.465
3.377GluIle: 3.377 ± 0.928
5.065GluLys: 5.065 ± 2.791
4.221GluLeu: 4.221 ± 1.549
1.688GluMet: 1.688 ± 2.16
3.377GluAsn: 3.377 ± 0.928
2.111GluPro: 2.111 ± 0.774
0.844GluGln: 0.844 ± 0.465
1.266GluArg: 1.266 ± 0.38
3.799GluSer: 3.799 ± 2.251
3.377GluThr: 3.377 ± 1.257
3.799GluVal: 3.799 ± 2.093
1.266GluTrp: 1.266 ± 0.983
2.533GluTyr: 2.533 ± 0.761
0.0GluXaa: 0.0 ± 0.0
Phe
2.533PheAla: 2.533 ± 0.761
2.111PheCys: 2.111 ± 3.255
2.955PheAsp: 2.955 ± 2.127
2.111PheGlu: 2.111 ± 1.163
2.111PhePhe: 2.111 ± 3.255
2.533PheGly: 2.533 ± 1.395
1.266PheHis: 1.266 ± 0.38
5.488PheIle: 5.488 ± 1.539
6.332PheLys: 6.332 ± 2.697
6.754PheLeu: 6.754 ± 2.253
2.111PheMet: 2.111 ± 0.61
3.799PheAsn: 3.799 ± 1.141
1.688PhePro: 1.688 ± 0.93
0.0PheGln: 0.0 ± 0.0
1.688PheArg: 1.688 ± 0.93
4.643PheSer: 4.643 ± 1.448
3.377PheThr: 3.377 ± 1.64
4.643PheVal: 4.643 ± 2.558
0.844PheTrp: 0.844 ± 0.427
2.111PheTyr: 2.111 ± 3.255
0.0PheXaa: 0.0 ± 0.0
Gly
2.111GlyAla: 2.111 ± 0.774
0.422GlyCys: 0.422 ± 0.573
2.533GlyAsp: 2.533 ± 0.761
0.844GlyGlu: 0.844 ± 0.427
3.377GlyPhe: 3.377 ± 1.764
1.266GlyGly: 1.266 ± 0.698
1.266GlyHis: 1.266 ± 0.698
3.799GlyIle: 3.799 ± 1.67
5.91GlyLys: 5.91 ± 4.331
8.864GlyLeu: 8.864 ± 1.927
2.533GlyMet: 2.533 ± 0.822
1.688GlyAsn: 1.688 ± 1.551
1.266GlyPro: 1.266 ± 0.983
0.422GlyGln: 0.422 ± 2.405
3.377GlyArg: 3.377 ± 0.928
4.643GlySer: 4.643 ± 1.828
5.065GlyThr: 5.065 ± 2.791
4.221GlyVal: 4.221 ± 1.881
1.266GlyTrp: 1.266 ± 0.983
0.844GlyTyr: 0.844 ± 0.427
0.0GlyXaa: 0.0 ± 0.0
His
0.422HisAla: 0.422 ± 0.233
0.422HisCys: 0.422 ± 0.573
0.0HisAsp: 0.0 ± 0.0
0.422HisGlu: 0.422 ± 0.233
0.422HisPhe: 0.422 ± 0.233
0.844HisGly: 0.844 ± 0.465
0.422HisHis: 0.422 ± 0.233
0.422HisIle: 0.422 ± 0.233
0.844HisLys: 0.844 ± 0.427
3.377HisLeu: 3.377 ± 0.928
1.688HisMet: 1.688 ± 1.644
2.111HisAsn: 2.111 ± 1.163
1.266HisPro: 1.266 ± 2.211
0.0HisGln: 0.0 ± 0.0
0.844HisArg: 0.844 ± 0.465
0.422HisSer: 0.422 ± 0.233
0.0HisThr: 0.0 ± 0.0
0.844HisVal: 0.844 ± 0.427
0.844HisTrp: 0.844 ± 0.465
0.844HisTyr: 0.844 ± 0.465
0.0HisXaa: 0.0 ± 0.0
Ile
3.799IleAla: 3.799 ± 1.534
0.422IleCys: 0.422 ± 0.233
3.377IleAsp: 3.377 ± 1.257
4.221IleGlu: 4.221 ± 1.706
5.488IlePhe: 5.488 ± 2.508
4.221IleGly: 4.221 ± 1.706
0.844IleHis: 0.844 ± 0.465
4.221IleIle: 4.221 ± 1.186
3.799IleLys: 3.799 ± 2.251
5.065IleLeu: 5.065 ± 1.522
2.111IleMet: 2.111 ± 1.163
3.799IleAsn: 3.799 ± 1.481
4.221IlePro: 4.221 ± 1.5
2.533IleGln: 2.533 ± 0.826
1.266IleArg: 1.266 ± 0.38
5.91IleSer: 5.91 ± 3.072
3.799IleThr: 3.799 ± 1.534
2.533IleVal: 2.533 ± 1.395
0.844IleTrp: 0.844 ± 0.427
2.111IleTyr: 2.111 ± 1.163
0.0IleXaa: 0.0 ± 0.0
Lys
4.221LysAla: 4.221 ± 1.549
0.0LysCys: 0.0 ± 0.0
3.799LysAsp: 3.799 ± 2.251
4.643LysGlu: 4.643 ± 2.037
6.754LysPhe: 6.754 ± 2.388
5.065LysGly: 5.065 ± 1.522
0.422LysHis: 0.422 ± 0.573
5.488LysIle: 5.488 ± 1.915
5.91LysLys: 5.91 ± 1.895
7.176LysLeu: 7.176 ± 2.392
1.688LysMet: 1.688 ± 0.93
5.91LysAsn: 5.91 ± 2.075
3.799LysPro: 3.799 ± 2.251
1.266LysGln: 1.266 ± 0.38
2.533LysArg: 2.533 ± 1.87
5.488LysSer: 5.488 ± 2.462
5.065LysThr: 5.065 ± 3.74
5.91LysVal: 5.91 ± 2.201
2.111LysTrp: 2.111 ± 0.774
3.377LysTyr: 3.377 ± 3.042
0.0LysXaa: 0.0 ± 0.0
Leu
3.377LeuAla: 3.377 ± 0.928
0.422LeuCys: 0.422 ± 0.233
5.065LeuAsp: 5.065 ± 1.393
2.955LeuGlu: 2.955 ± 0.816
6.332LeuPhe: 6.332 ± 3.706
4.221LeuGly: 4.221 ± 1.256
0.422LeuHis: 0.422 ± 0.233
3.799LeuIle: 3.799 ± 3.004
5.91LeuLys: 5.91 ± 1.633
10.131LeuLeu: 10.131 ± 3.302
2.111LeuMet: 2.111 ± 1.403
5.488LeuAsn: 5.488 ± 2.01
5.065LeuPro: 5.065 ± 2.589
2.111LeuGln: 2.111 ± 3.365
5.91LeuArg: 5.91 ± 2.201
9.709LeuSer: 9.709 ± 1.108
10.131LeuThr: 10.131 ± 1.763
7.598LeuVal: 7.598 ± 3.067
1.266LeuTrp: 1.266 ± 0.38
3.799LeuTyr: 3.799 ± 2.868
0.0LeuXaa: 0.0 ± 0.0
Met
2.111MetAla: 2.111 ± 0.774
0.422MetCys: 0.422 ± 2.405
1.266MetAsp: 1.266 ± 0.698
1.266MetGlu: 1.266 ± 2.22
0.422MetPhe: 0.422 ± 0.233
1.688MetGly: 1.688 ± 3.417
0.422MetHis: 0.422 ± 0.233
3.799MetIle: 3.799 ± 1.481
2.533MetLys: 2.533 ± 0.826
2.955MetLeu: 2.955 ± 1.038
0.0MetMet: 0.0 ± 0.0
1.688MetAsn: 1.688 ± 0.93
0.844MetPro: 0.844 ± 0.427
0.422MetGln: 0.422 ± 0.233
1.266MetArg: 1.266 ± 2.22
1.266MetSer: 1.266 ± 0.38
2.533MetThr: 2.533 ± 0.826
1.266MetVal: 1.266 ± 0.38
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.111AsnAla: 2.111 ± 2.124
0.422AsnCys: 0.422 ± 0.233
1.688AsnAsp: 1.688 ± 0.854
5.065AsnGlu: 5.065 ± 2.791
5.065AsnPhe: 5.065 ± 1.651
2.111AsnGly: 2.111 ± 0.774
0.844AsnHis: 0.844 ± 0.427
2.533AsnIle: 2.533 ± 1.395
2.111AsnLys: 2.111 ± 0.774
4.221AsnLeu: 4.221 ± 1.706
0.422AsnMet: 0.422 ± 0.233
3.377AsnAsn: 3.377 ± 1.257
3.377AsnPro: 3.377 ± 1.64
0.422AsnGln: 0.422 ± 2.405
2.111AsnArg: 2.111 ± 0.628
2.111AsnSer: 2.111 ± 1.963
2.111AsnThr: 2.111 ± 1.403
5.91AsnVal: 5.91 ± 3.869
1.266AsnTrp: 1.266 ± 0.983
3.377AsnTyr: 3.377 ± 1.861
0.0AsnXaa: 0.0 ± 0.0
Pro
1.688ProAla: 1.688 ± 0.854
0.0ProCys: 0.0 ± 0.0
3.799ProAsp: 3.799 ± 1.481
3.799ProGlu: 3.799 ± 1.141
2.533ProPhe: 2.533 ± 1.921
2.111ProGly: 2.111 ± 1.403
0.0ProHis: 0.0 ± 0.0
2.955ProIle: 2.955 ± 0.816
4.643ProLys: 4.643 ± 2.224
2.111ProLeu: 2.111 ± 4.478
0.0ProMet: 0.0 ± 0.0
2.533ProAsn: 2.533 ± 0.826
2.533ProPro: 2.533 ± 0.761
1.688ProGln: 1.688 ± 0.464
3.377ProArg: 3.377 ± 1.707
5.488ProSer: 5.488 ± 3.929
3.377ProThr: 3.377 ± 3.072
3.799ProVal: 3.799 ± 1.141
0.0ProTrp: 0.0 ± 0.0
0.844ProTyr: 0.844 ± 0.427
0.0ProXaa: 0.0 ± 0.0
Gln
0.422GlnAla: 0.422 ± 0.233
0.0GlnCys: 0.0 ± 0.0
1.688GlnAsp: 1.688 ± 0.854
2.111GlnGlu: 2.111 ± 0.628
2.533GlnPhe: 2.533 ± 0.826
0.422GlnGly: 0.422 ± 0.573
0.422GlnHis: 0.422 ± 0.233
1.266GlnIle: 1.266 ± 0.38
2.955GlnLys: 2.955 ± 1.771
2.111GlnLeu: 2.111 ± 7.705
1.266GlnMet: 1.266 ± 0.698
0.0GlnAsn: 0.0 ± 0.0
0.0GlnPro: 0.0 ± 0.0
0.422GlnGln: 0.422 ± 0.233
3.377GlnArg: 3.377 ± 1.143
2.955GlnSer: 2.955 ± 1.803
0.844GlnThr: 0.844 ± 0.465
2.533GlnVal: 2.533 ± 0.826
0.422GlnTrp: 0.422 ± 0.233
0.844GlnTyr: 0.844 ± 0.465
0.0GlnXaa: 0.0 ± 0.0
Arg
1.688ArgAla: 1.688 ± 0.464
0.0ArgCys: 0.0 ± 0.0
1.688ArgAsp: 1.688 ± 0.93
2.955ArgGlu: 2.955 ± 0.816
3.377ArgPhe: 3.377 ± 1.707
2.111ArgGly: 2.111 ± 1.403
2.955ArgHis: 2.955 ± 2.127
1.688ArgIle: 1.688 ± 0.464
4.643ArgLys: 4.643 ± 2.037
4.643ArgLeu: 4.643 ± 1.349
0.844ArgMet: 0.844 ± 0.427
1.688ArgAsn: 1.688 ± 0.464
2.111ArgPro: 2.111 ± 2.087
2.111ArgGln: 2.111 ± 2.124
3.377ArgArg: 3.377 ± 2.385
5.91ArgSer: 5.91 ± 1.085
3.799ArgThr: 3.799 ± 1.141
1.266ArgVal: 1.266 ± 0.698
0.422ArgTrp: 0.422 ± 0.233
2.111ArgTyr: 2.111 ± 0.774
0.0ArgXaa: 0.0 ± 0.0
Ser
3.799SerAla: 3.799 ± 1.67
1.266SerCys: 1.266 ± 0.698
3.799SerAsp: 3.799 ± 1.613
3.799SerGlu: 3.799 ± 1.141
5.488SerPhe: 5.488 ± 2.508
4.221SerGly: 4.221 ± 1.549
1.688SerHis: 1.688 ± 2.16
5.065SerIle: 5.065 ± 1.409
9.287SerLys: 9.287 ± 3.035
5.065SerLeu: 5.065 ± 1.651
1.688SerMet: 1.688 ± 0.93
2.111SerAsn: 2.111 ± 2.124
1.688SerPro: 1.688 ± 4.6
2.955SerGln: 2.955 ± 2.53
4.643SerArg: 4.643 ± 1.349
6.754SerSer: 6.754 ± 2.074
5.065SerThr: 5.065 ± 1.522
5.488SerVal: 5.488 ± 3.688
1.266SerTrp: 1.266 ± 0.983
5.065SerTyr: 5.065 ± 1.651
0.0SerXaa: 0.0 ± 0.0
Thr
2.955ThrAla: 2.955 ± 1.038
0.422ThrCys: 0.422 ± 0.233
2.111ThrAsp: 2.111 ± 0.628
3.377ThrGlu: 3.377 ± 1.861
1.688ThrPhe: 1.688 ± 0.464
5.91ThrGly: 5.91 ± 4.656
0.844ThrHis: 0.844 ± 0.427
8.02ThrIle: 8.02 ± 1.508
5.91ThrLys: 5.91 ± 1.633
5.488ThrLeu: 5.488 ± 1.915
1.266ThrMet: 1.266 ± 2.423
2.533ThrAsn: 2.533 ± 0.826
6.332ThrPro: 6.332 ± 2.888
0.844ThrGln: 0.844 ± 1.145
3.377ThrArg: 3.377 ± 2.311
3.377ThrSer: 3.377 ± 1.764
6.332ThrThr: 6.332 ± 2.852
2.111ThrVal: 2.111 ± 1.403
0.844ThrTrp: 0.844 ± 0.465
2.111ThrTyr: 2.111 ± 0.774
0.0ThrXaa: 0.0 ± 0.0
Val
2.955ValAla: 2.955 ± 1.191
1.688ValCys: 1.688 ± 0.854
3.799ValAsp: 3.799 ± 1.141
3.799ValGlu: 3.799 ± 1.141
2.955ValPhe: 2.955 ± 0.816
5.91ValGly: 5.91 ± 8.567
0.422ValHis: 0.422 ± 0.233
4.221ValIle: 4.221 ± 1.256
5.065ValLys: 5.065 ± 1.224
5.065ValLeu: 5.065 ± 1.393
1.266ValMet: 1.266 ± 0.38
2.111ValAsn: 2.111 ± 4.566
2.955ValPro: 2.955 ± 1.191
3.799ValGln: 3.799 ± 1.481
3.799ValArg: 3.799 ± 2.093
5.488ValSer: 5.488 ± 1.442
4.221ValThr: 4.221 ± 1.706
5.91ValVal: 5.91 ± 1.895
3.377ValTrp: 3.377 ± 0.928
2.533ValTyr: 2.533 ± 1.281
0.0ValXaa: 0.0 ± 0.0
Trp
0.422TrpAla: 0.422 ± 0.233
0.844TrpCys: 0.844 ± 0.465
0.844TrpAsp: 0.844 ± 0.427
1.266TrpGlu: 1.266 ± 0.983
0.844TrpPhe: 0.844 ± 0.465
0.844TrpGly: 0.844 ± 0.427
0.0TrpHis: 0.0 ± 0.0
1.266TrpIle: 1.266 ± 0.38
0.844TrpLys: 0.844 ± 0.427
3.799TrpLeu: 3.799 ± 1.613
0.0TrpMet: 0.0 ± 0.0
0.844TrpAsn: 0.844 ± 0.465
0.844TrpPro: 0.844 ± 0.427
1.266TrpGln: 1.266 ± 0.38
1.266TrpArg: 1.266 ± 0.38
1.688TrpSer: 1.688 ± 0.464
1.266TrpThr: 1.266 ± 0.983
1.266TrpVal: 1.266 ± 0.38
0.0TrpTrp: 0.0 ± 0.0
1.266TrpTyr: 1.266 ± 0.38
0.0TrpXaa: 0.0 ± 0.0
Tyr
0.844TyrAla: 0.844 ± 0.427
0.0TyrCys: 0.0 ± 0.0
2.533TyrAsp: 2.533 ± 0.826
2.111TyrGlu: 2.111 ± 0.774
1.688TyrPhe: 1.688 ± 0.93
2.533TyrGly: 2.533 ± 0.761
2.111TyrHis: 2.111 ± 0.774
1.688TyrIle: 1.688 ± 3.463
3.799TyrLys: 3.799 ± 1.613
3.799TyrLeu: 3.799 ± 6.779
2.111TyrMet: 2.111 ± 1.163
2.955TyrAsn: 2.955 ± 1.038
0.844TyrPro: 0.844 ± 0.465
0.844TyrGln: 0.844 ± 0.465
1.688TyrArg: 1.688 ± 0.464
2.955TyrSer: 2.955 ± 1.038
1.266TyrThr: 1.266 ± 0.38
2.533TyrVal: 2.533 ± 0.826
1.266TyrTrp: 1.266 ± 0.38
1.266TyrTyr: 1.266 ± 0.38
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (2370 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski