Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_379

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.667AlaAla: 4.667 ± 2.089
0.0AlaCys: 0.0 ± 0.0
4.084AlaAsp: 4.084 ± 1.238
4.084AlaGlu: 4.084 ± 1.959
1.167AlaPhe: 1.167 ± 0.477
8.751AlaGly: 8.751 ± 4.064
1.167AlaHis: 1.167 ± 1.714
2.917AlaIle: 2.917 ± 1.572
3.501AlaLys: 3.501 ± 1.915
4.084AlaLeu: 4.084 ± 1.765
0.583AlaMet: 0.583 ± 0.409
5.251AlaAsn: 5.251 ± 1.205
1.75AlaPro: 1.75 ± 0.902
8.168AlaGln: 8.168 ± 2.279
4.667AlaArg: 4.667 ± 1.049
1.75AlaSer: 1.75 ± 0.761
3.501AlaThr: 3.501 ± 1.021
2.334AlaVal: 2.334 ± 0.549
1.167AlaTrp: 1.167 ± 0.818
3.501AlaTyr: 3.501 ± 1.431
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.583CysAsp: 0.583 ± 0.857
1.167CysGlu: 1.167 ± 0.78
0.0CysPhe: 0.0 ± 0.0
0.583CysGly: 0.583 ± 0.56
0.583CysHis: 0.583 ± 0.604
0.0CysIle: 0.0 ± 0.0
1.167CysLys: 1.167 ± 1.121
1.167CysLeu: 1.167 ± 0.546
0.0CysMet: 0.0 ± 0.0
0.583CysAsn: 0.583 ± 0.56
0.0CysPro: 0.0 ± 0.0
0.583CysGln: 0.583 ± 0.56
0.0CysArg: 0.0 ± 0.0
0.583CysSer: 0.583 ± 0.409
0.583CysThr: 0.583 ± 0.941
0.583CysVal: 0.583 ± 0.684
0.0CysTrp: 0.0 ± 0.0
1.167CysTyr: 1.167 ± 0.688
0.0CysXaa: 0.0 ± 0.0
Asp
3.501AspAla: 3.501 ± 1.467
1.75AspCys: 1.75 ± 1.36
2.334AspAsp: 2.334 ± 0.91
2.917AspGlu: 2.917 ± 1.104
3.501AspPhe: 3.501 ± 1.304
2.917AspGly: 2.917 ± 1.041
0.0AspHis: 0.0 ± 0.0
3.501AspIle: 3.501 ± 1.828
4.084AspLys: 4.084 ± 1.395
2.917AspLeu: 2.917 ± 1.696
1.167AspMet: 1.167 ± 1.074
1.75AspAsn: 1.75 ± 0.879
1.75AspPro: 1.75 ± 0.761
1.167AspGln: 1.167 ± 0.818
1.167AspArg: 1.167 ± 0.838
1.167AspSer: 1.167 ± 1.132
5.251AspThr: 5.251 ± 1.285
1.167AspVal: 1.167 ± 0.546
0.0AspTrp: 0.0 ± 0.0
4.084AspTyr: 4.084 ± 2.214
0.0AspXaa: 0.0 ± 0.0
Glu
4.084GluAla: 4.084 ± 2.919
1.167GluCys: 1.167 ± 0.546
1.75GluAsp: 1.75 ± 0.785
10.502GluGlu: 10.502 ± 3.876
1.167GluPhe: 1.167 ± 0.477
1.167GluGly: 1.167 ± 0.477
1.75GluHis: 1.75 ± 1.288
5.834GluIle: 5.834 ± 2.327
8.168GluLys: 8.168 ± 3.708
7.001GluLeu: 7.001 ± 2.407
0.583GluMet: 0.583 ± 0.736
6.418GluAsn: 6.418 ± 3.348
0.583GluPro: 0.583 ± 0.684
6.418GluGln: 6.418 ± 1.727
4.667GluArg: 4.667 ± 1.683
5.251GluSer: 5.251 ± 1.442
4.084GluThr: 4.084 ± 0.878
3.501GluVal: 3.501 ± 2.162
0.0GluTrp: 0.0 ± 0.0
1.167GluTyr: 1.167 ± 0.818
0.0GluXaa: 0.0 ± 0.0
Phe
1.75PheAla: 1.75 ± 0.879
0.0PheCys: 0.0 ± 0.0
2.917PheAsp: 2.917 ± 0.512
1.75PheGlu: 1.75 ± 1.309
1.75PhePhe: 1.75 ± 0.652
3.501PheGly: 3.501 ± 1.431
1.167PheHis: 1.167 ± 0.818
2.334PheIle: 2.334 ± 0.853
2.334PheLys: 2.334 ± 1.531
1.75PheLeu: 1.75 ± 0.785
1.75PheMet: 1.75 ± 1.779
3.501PheAsn: 3.501 ± 1.155
1.167PhePro: 1.167 ± 0.546
0.0PheGln: 0.0 ± 0.0
0.583PheArg: 0.583 ± 0.56
1.75PheSer: 1.75 ± 1.028
1.167PheThr: 1.167 ± 0.78
2.917PheVal: 2.917 ± 1.514
1.167PheTrp: 1.167 ± 0.818
1.75PheTyr: 1.75 ± 0.652
0.0PheXaa: 0.0 ± 0.0
Gly
2.917GlyAla: 2.917 ± 1.458
0.583GlyCys: 0.583 ± 0.56
3.501GlyAsp: 3.501 ± 0.872
4.667GlyGlu: 4.667 ± 2.114
2.334GlyPhe: 2.334 ± 1.127
7.001GlyGly: 7.001 ± 3.377
1.167GlyHis: 1.167 ± 0.546
6.418GlyIle: 6.418 ± 1.976
4.667GlyLys: 4.667 ± 0.632
4.667GlyLeu: 4.667 ± 1.361
4.084GlyMet: 4.084 ± 0.794
8.168GlyAsn: 8.168 ± 1.344
0.583GlyPro: 0.583 ± 0.409
2.917GlyGln: 2.917 ± 1.028
0.583GlyArg: 0.583 ± 0.56
0.0GlySer: 0.0 ± 0.0
7.001GlyThr: 7.001 ± 1.564
2.917GlyVal: 2.917 ± 0.983
0.583GlyTrp: 0.583 ± 0.604
7.001GlyTyr: 7.001 ± 2.231
0.0GlyXaa: 0.0 ± 0.0
His
0.583HisAla: 0.583 ± 0.409
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
0.0HisGlu: 0.0 ± 0.0
0.583HisPhe: 0.583 ± 0.804
1.75HisGly: 1.75 ± 1.217
0.0HisHis: 0.0 ± 0.0
0.583HisIle: 0.583 ± 0.56
0.0HisLys: 0.0 ± 0.0
1.75HisLeu: 1.75 ± 1.456
0.583HisMet: 0.583 ± 0.409
2.334HisAsn: 2.334 ± 1.637
0.583HisPro: 0.583 ± 0.56
0.583HisGln: 0.583 ± 0.684
0.0HisArg: 0.0 ± 0.0
1.167HisSer: 1.167 ± 0.546
2.917HisThr: 2.917 ± 1.207
0.583HisVal: 0.583 ± 0.409
0.0HisTrp: 0.0 ± 0.0
1.75HisTyr: 1.75 ± 0.787
0.0HisXaa: 0.0 ± 0.0
Ile
4.084IleAla: 4.084 ± 2.758
1.167IleCys: 1.167 ± 0.688
5.251IleAsp: 5.251 ± 2.522
3.501IleGlu: 3.501 ± 1.021
1.167IlePhe: 1.167 ± 0.546
4.667IleGly: 4.667 ± 1.957
0.583IleHis: 0.583 ± 0.409
2.334IleIle: 2.334 ± 0.91
5.251IleLys: 5.251 ± 1.964
4.667IleLeu: 4.667 ± 1.404
2.334IleMet: 2.334 ± 0.722
8.168IleAsn: 8.168 ± 3.159
1.167IlePro: 1.167 ± 0.818
2.334IleGln: 2.334 ± 0.549
4.084IleArg: 4.084 ± 1.492
2.917IleSer: 2.917 ± 1.028
9.335IleThr: 9.335 ± 2.438
2.917IleVal: 2.917 ± 1.337
2.917IleTrp: 2.917 ± 2.198
1.75IleTyr: 1.75 ± 0.879
0.0IleXaa: 0.0 ± 0.0
Lys
5.834LysAla: 5.834 ± 3.426
0.0LysCys: 0.0 ± 0.0
4.084LysAsp: 4.084 ± 2.249
4.084LysGlu: 4.084 ± 1.568
1.75LysPhe: 1.75 ± 1.047
5.251LysGly: 5.251 ± 1.379
1.167LysHis: 1.167 ± 1.121
8.751LysIle: 8.751 ± 1.485
4.084LysLys: 4.084 ± 2.377
4.084LysLeu: 4.084 ± 1.473
3.501LysMet: 3.501 ± 1.216
8.751LysAsn: 8.751 ± 3.026
1.167LysPro: 1.167 ± 0.766
4.667LysGln: 4.667 ± 1.476
3.501LysArg: 3.501 ± 2.126
4.084LysSer: 4.084 ± 1.604
7.001LysThr: 7.001 ± 1.841
4.667LysVal: 4.667 ± 1.63
0.583LysTrp: 0.583 ± 0.56
3.501LysTyr: 3.501 ± 1.394
0.0LysXaa: 0.0 ± 0.0
Leu
5.251LeuAla: 5.251 ± 0.736
0.583LeuCys: 0.583 ± 0.857
2.334LeuAsp: 2.334 ± 1.091
4.084LeuGlu: 4.084 ± 1.619
2.917LeuPhe: 2.917 ± 1.503
7.001LeuGly: 7.001 ± 2.009
1.75LeuHis: 1.75 ± 1.028
5.251LeuIle: 5.251 ± 1.094
5.251LeuLys: 5.251 ± 1.205
4.084LeuLeu: 4.084 ± 1.639
1.75LeuMet: 1.75 ± 0.871
5.834LeuAsn: 5.834 ± 1.583
3.501LeuPro: 3.501 ± 1.476
2.917LeuGln: 2.917 ± 1.568
1.167LeuArg: 1.167 ± 0.891
1.167LeuSer: 1.167 ± 0.891
4.667LeuThr: 4.667 ± 1.089
2.334LeuVal: 2.334 ± 1.468
1.167LeuTrp: 1.167 ± 0.866
2.917LeuTyr: 2.917 ± 1.275
0.0LeuXaa: 0.0 ± 0.0
Met
1.75MetAla: 1.75 ± 1.045
0.583MetCys: 0.583 ± 0.56
1.167MetAsp: 1.167 ± 0.818
1.75MetGlu: 1.75 ± 0.756
0.583MetPhe: 0.583 ± 0.857
2.917MetGly: 2.917 ± 1.067
1.167MetHis: 1.167 ± 0.688
0.0MetIle: 0.0 ± 0.0
1.167MetLys: 1.167 ± 1.385
1.75MetLeu: 1.75 ± 0.898
0.0MetMet: 0.0 ± 0.0
1.167MetAsn: 1.167 ± 0.826
1.167MetPro: 1.167 ± 0.477
2.334MetGln: 2.334 ± 0.728
1.167MetArg: 1.167 ± 0.477
1.75MetSer: 1.75 ± 0.652
2.917MetThr: 2.917 ± 1.185
0.0MetVal: 0.0 ± 0.0
1.167MetTrp: 1.167 ± 0.546
0.583MetTyr: 0.583 ± 0.409
0.0MetXaa: 0.0 ± 0.0
Asn
5.834AsnAla: 5.834 ± 1.73
1.167AsnCys: 1.167 ± 0.78
4.084AsnAsp: 4.084 ± 2.183
7.585AsnGlu: 7.585 ± 2.649
3.501AsnPhe: 3.501 ± 1.163
5.251AsnGly: 5.251 ± 1.077
1.75AsnHis: 1.75 ± 0.891
4.667AsnIle: 4.667 ± 1.894
9.918AsnLys: 9.918 ± 2.645
5.834AsnLeu: 5.834 ± 0.871
1.75AsnMet: 1.75 ± 1.637
7.585AsnAsn: 7.585 ± 3.299
2.334AsnPro: 2.334 ± 0.549
3.501AsnGln: 3.501 ± 2.245
2.334AsnArg: 2.334 ± 1.637
3.501AsnSer: 3.501 ± 1.365
3.501AsnThr: 3.501 ± 1.073
2.917AsnVal: 2.917 ± 1.651
2.334AsnTrp: 2.334 ± 0.954
9.335AsnTyr: 9.335 ± 2.256
0.0AsnXaa: 0.0 ± 0.0
Pro
1.75ProAla: 1.75 ± 0.652
0.0ProCys: 0.0 ± 0.0
0.583ProAsp: 0.583 ± 0.409
0.0ProGlu: 0.0 ± 0.0
1.167ProPhe: 1.167 ± 0.818
0.583ProGly: 0.583 ± 0.409
0.583ProHis: 0.583 ± 0.409
2.917ProIle: 2.917 ± 1.696
1.167ProLys: 1.167 ± 0.818
1.75ProLeu: 1.75 ± 0.785
0.0ProMet: 0.0 ± 0.0
1.75ProAsn: 1.75 ± 0.787
0.583ProPro: 0.583 ± 0.804
1.75ProGln: 1.75 ± 1.045
2.917ProArg: 2.917 ± 1.19
2.334ProSer: 2.334 ± 1.116
4.084ProThr: 4.084 ± 1.067
0.0ProVal: 0.0 ± 0.0
0.0ProTrp: 0.0 ± 0.0
1.167ProTyr: 1.167 ± 0.818
0.0ProXaa: 0.0 ± 0.0
Gln
4.667GlnAla: 4.667 ± 1.335
0.583GlnCys: 0.583 ± 0.604
2.917GlnAsp: 2.917 ± 1.392
7.001GlnGlu: 7.001 ± 1.952
1.75GlnPhe: 1.75 ± 1.16
3.501GlnGly: 3.501 ± 1.304
0.583GlnHis: 0.583 ± 0.409
8.168GlnIle: 8.168 ± 1.77
2.917GlnLys: 2.917 ± 1.628
2.334GlnLeu: 2.334 ± 1.538
1.75GlnMet: 1.75 ± 0.785
6.418GlnAsn: 6.418 ± 1.378
0.0GlnPro: 0.0 ± 0.0
1.167GlnGln: 1.167 ± 1.209
2.917GlnArg: 2.917 ± 0.948
2.917GlnSer: 2.917 ± 1.067
2.917GlnThr: 2.917 ± 1.154
1.167GlnVal: 1.167 ± 0.818
1.167GlnTrp: 1.167 ± 0.818
0.583GlnTyr: 0.583 ± 0.409
0.0GlnXaa: 0.0 ± 0.0
Arg
2.334ArgAla: 2.334 ± 1.291
0.0ArgCys: 0.0 ± 0.0
0.0ArgAsp: 0.0 ± 0.0
3.501ArgGlu: 3.501 ± 1.888
1.75ArgPhe: 1.75 ± 1.681
0.583ArgGly: 0.583 ± 0.409
0.583ArgHis: 0.583 ± 0.684
2.334ArgIle: 2.334 ± 1.194
7.585ArgLys: 7.585 ± 3.051
1.75ArgLeu: 1.75 ± 0.785
0.583ArgMet: 0.583 ± 0.409
3.501ArgAsn: 3.501 ± 1.734
0.0ArgPro: 0.0 ± 0.0
3.501ArgGln: 3.501 ± 1.472
1.75ArgArg: 1.75 ± 0.785
1.167ArgSer: 1.167 ± 0.818
4.667ArgThr: 4.667 ± 0.832
1.167ArgVal: 1.167 ± 0.818
1.167ArgTrp: 1.167 ± 0.838
1.75ArgTyr: 1.75 ± 1.028
0.0ArgXaa: 0.0 ± 0.0
Ser
7.001SerAla: 7.001 ± 2.376
0.0SerCys: 0.0 ± 0.0
1.75SerAsp: 1.75 ± 0.879
2.334SerGlu: 2.334 ± 1.004
2.917SerPhe: 2.917 ± 1.069
1.75SerGly: 1.75 ± 0.785
0.583SerHis: 0.583 ± 0.804
1.75SerIle: 1.75 ± 0.897
2.917SerLys: 2.917 ± 0.512
4.084SerLeu: 4.084 ± 1.035
0.583SerMet: 0.583 ± 0.409
4.084SerAsn: 4.084 ± 1.253
0.583SerPro: 0.583 ± 0.409
3.501SerGln: 3.501 ± 0.985
0.0SerArg: 0.0 ± 0.0
1.167SerSer: 1.167 ± 0.818
2.917SerThr: 2.917 ± 0.983
1.167SerVal: 1.167 ± 0.78
1.167SerTrp: 1.167 ± 0.477
2.334SerTyr: 2.334 ± 1.127
0.0SerXaa: 0.0 ± 0.0
Thr
4.667ThrAla: 4.667 ± 2.404
1.167ThrCys: 1.167 ± 0.688
4.667ThrAsp: 4.667 ± 1.692
8.751ThrGlu: 8.751 ± 1.692
4.667ThrPhe: 4.667 ± 1.575
7.001ThrGly: 7.001 ± 1.83
0.583ThrHis: 0.583 ± 0.409
4.667ThrIle: 4.667 ± 1.187
8.751ThrLys: 8.751 ± 3.447
6.418ThrLeu: 6.418 ± 1.134
0.0ThrMet: 0.0 ± 0.0
5.251ThrAsn: 5.251 ± 2.738
4.084ThrPro: 4.084 ± 1.611
4.084ThrGln: 4.084 ± 1.027
3.501ThrArg: 3.501 ± 1.02
2.334ThrSer: 2.334 ± 1.439
5.834ThrThr: 5.834 ± 1.707
1.167ThrVal: 1.167 ± 0.907
1.75ThrTrp: 1.75 ± 1.009
2.917ThrTyr: 2.917 ± 1.149
0.0ThrXaa: 0.0 ± 0.0
Val
2.334ValAla: 2.334 ± 1.637
0.0ValCys: 0.0 ± 0.0
2.334ValAsp: 2.334 ± 1.004
0.583ValGlu: 0.583 ± 0.409
1.167ValPhe: 1.167 ± 0.78
0.583ValGly: 0.583 ± 0.604
0.583ValHis: 0.583 ± 0.409
2.334ValIle: 2.334 ± 1.779
4.084ValLys: 4.084 ± 1.212
2.334ValLeu: 2.334 ± 1.45
0.583ValMet: 0.583 ± 0.804
3.501ValAsn: 3.501 ± 1.04
1.75ValPro: 1.75 ± 1.045
1.167ValGln: 1.167 ± 0.688
2.917ValArg: 2.917 ± 1.149
2.917ValSer: 2.917 ± 0.898
4.667ValThr: 4.667 ± 2.519
0.583ValVal: 0.583 ± 0.409
0.0ValTrp: 0.0 ± 0.0
0.583ValTyr: 0.583 ± 0.409
0.0ValXaa: 0.0 ± 0.0
Trp
1.167TrpAla: 1.167 ± 0.688
0.0TrpCys: 0.0 ± 0.0
0.583TrpAsp: 0.583 ± 0.409
2.917TrpGlu: 2.917 ± 1.483
0.583TrpPhe: 0.583 ± 0.409
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.583TrpIle: 0.583 ± 0.409
0.583TrpLys: 0.583 ± 0.56
0.583TrpLeu: 0.583 ± 0.684
0.583TrpMet: 0.583 ± 0.409
0.583TrpAsn: 0.583 ± 0.604
0.0TrpPro: 0.0 ± 0.0
1.75TrpGln: 1.75 ± 1.813
0.583TrpArg: 0.583 ± 0.941
1.75TrpSer: 1.75 ± 0.652
2.917TrpThr: 2.917 ± 1.47
0.583TrpVal: 0.583 ± 0.409
0.583TrpTrp: 0.583 ± 0.56
0.583TrpTyr: 0.583 ± 0.409
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.917TyrAla: 2.917 ± 0.806
0.583TyrCys: 0.583 ± 0.56
1.167TyrAsp: 1.167 ± 0.766
4.084TyrGlu: 4.084 ± 1.282
0.583TyrPhe: 0.583 ± 0.857
7.001TyrGly: 7.001 ± 2.619
0.0TyrHis: 0.0 ± 0.0
5.251TyrIle: 5.251 ± 1.699
2.917TyrLys: 2.917 ± 1.275
2.917TyrLeu: 2.917 ± 1.173
2.334TyrMet: 2.334 ± 1.127
4.667TyrAsn: 4.667 ± 1.702
2.334TyrPro: 2.334 ± 1.127
2.917TyrGln: 2.917 ± 1.351
1.167TyrArg: 1.167 ± 1.121
2.917TyrSer: 2.917 ± 0.806
2.334TyrThr: 2.334 ± 0.837
2.334TyrVal: 2.334 ± 1.127
0.0TyrTrp: 0.0 ± 0.0
3.501TyrTyr: 3.501 ± 1.155
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 7 proteins (1715 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski