Schaedlerella arabinosiphila

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Lachnospiraceae; Schaedlerella

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5980 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|N2A3L7|N2A3L7_9FIRM Ethanolamine utilization protein EutN OS=Schaedlerella arabinosiphila OX=2044587 GN=C824_05627 PE=4 SV=1
MM1 pKa = 7.5KK2 pKa = 10.51KK3 pKa = 10.05FVALFLALTLTCGLAACGGGGNSGGGDD30 pKa = 3.74SNDD33 pKa = 3.71TGGSGASTEE42 pKa = 4.07EE43 pKa = 4.17STDD46 pKa = 3.29GDD48 pKa = 3.89EE49 pKa = 5.73KK50 pKa = 11.07EE51 pKa = 4.76DD52 pKa = 3.58SGSGEE57 pKa = 3.69KK58 pKa = 10.46VAINVIAAQYY68 pKa = 8.87GQNTTKK74 pKa = 9.08WWSDD78 pKa = 3.22FVKK81 pKa = 10.58DD82 pKa = 4.04FTTEE86 pKa = 3.87YY87 pKa = 10.42PNIDD91 pKa = 3.3LTVEE95 pKa = 3.93VEE97 pKa = 4.12SWNDD101 pKa = 2.46IYY103 pKa = 11.3TVVNTRR109 pKa = 11.84ISNNDD114 pKa = 3.06APDD117 pKa = 3.41ILNIDD122 pKa = 3.48VFANYY127 pKa = 9.66QADD130 pKa = 4.2DD131 pKa = 4.26LLLPAEE137 pKa = 4.98DD138 pKa = 3.96FVSDD142 pKa = 3.4EE143 pKa = 4.92TYY145 pKa = 11.32KK146 pKa = 11.09KK147 pKa = 9.54MYY149 pKa = 9.48PAFLEE154 pKa = 3.91QSNVDD159 pKa = 3.41GTIWAIPDD167 pKa = 3.61LASARR172 pKa = 11.84ALYY175 pKa = 10.02VNKK178 pKa = 10.43DD179 pKa = 3.03ILDD182 pKa = 3.93AAKK185 pKa = 10.86VEE187 pKa = 5.25IPTTWDD193 pKa = 3.31EE194 pKa = 4.22LKK196 pKa = 10.56KK197 pKa = 10.76ACEE200 pKa = 4.18AIKK203 pKa = 10.5AYY205 pKa = 10.15DD206 pKa = 3.53SKK208 pKa = 10.89IYY210 pKa = 9.79PWGIDD215 pKa = 3.14MTTDD219 pKa = 2.85EE220 pKa = 4.57GQAAFAYY227 pKa = 7.2YY228 pKa = 8.91TWNNGGGFVDD238 pKa = 5.26EE239 pKa = 4.97DD240 pKa = 4.21NNWALNSDD248 pKa = 4.09EE249 pKa = 4.56NVEE252 pKa = 4.03AVEE255 pKa = 4.26FAISLVKK262 pKa = 10.53DD263 pKa = 4.56GYY265 pKa = 9.47TNSDD269 pKa = 3.39PSNDD273 pKa = 3.13TRR275 pKa = 11.84YY276 pKa = 10.71DD277 pKa = 3.61LQDD280 pKa = 3.21MFGAGQVAMMIGPNSIPTYY299 pKa = 9.99IADD302 pKa = 3.56GGYY305 pKa = 9.63SVNYY309 pKa = 8.79EE310 pKa = 4.03VAPIPTNGDD319 pKa = 3.48NEE321 pKa = 4.65SVSAGVMDD329 pKa = 5.53RR330 pKa = 11.84FMCFDD335 pKa = 3.57NGYY338 pKa = 10.62SDD340 pKa = 5.76AEE342 pKa = 4.16LEE344 pKa = 4.39AIKK347 pKa = 9.97TFFDD351 pKa = 3.63YY352 pKa = 10.25FYY354 pKa = 10.87EE355 pKa = 4.14DD356 pKa = 2.68TRR358 pKa = 11.84YY359 pKa = 10.59SDD361 pKa = 3.26WVLMEE366 pKa = 4.43GFLPATSTGGEE377 pKa = 3.91ILAEE381 pKa = 4.46ADD383 pKa = 3.07EE384 pKa = 5.56SMASWVDD391 pKa = 3.24IVGSCNFYY399 pKa = 9.29PTAKK403 pKa = 10.06TEE405 pKa = 3.99WDD407 pKa = 3.59DD408 pKa = 3.73VKK410 pKa = 11.15QGVINVEE417 pKa = 3.95QQALLDD423 pKa = 4.22GNVKK427 pKa = 10.19EE428 pKa = 5.75LLDD431 pKa = 3.83EE432 pKa = 4.48LQAEE436 pKa = 4.41IAEE439 pKa = 4.32

Molecular weight: 48.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|N1ZVG7|N1ZVG7_9FIRM HTH cro/C1-type domain-containing protein OS=Schaedlerella arabinosiphila OX=2044587 GN=C824_05465 PE=4 SV=1
MM1 pKa = 7.17FVCNNRR7 pKa = 11.84GLSFGIAFYY16 pKa = 10.47LYY18 pKa = 9.6HH19 pKa = 6.79FCLIHH24 pKa = 6.89SDD26 pKa = 3.3VRR28 pKa = 11.84ISRR31 pKa = 11.84RR32 pKa = 11.84IGKK35 pKa = 8.94SRR37 pKa = 11.84NGVLILMWLWIRR49 pKa = 11.84FPLLKK54 pKa = 10.51AVFQGLRR61 pKa = 11.84AYY63 pKa = 10.25LRR65 pKa = 11.84QYY67 pKa = 9.37QTDD70 pKa = 3.34QDD72 pKa = 3.39KK73 pKa = 11.21KK74 pKa = 10.76MRR76 pKa = 11.84DD77 pKa = 2.97RR78 pKa = 11.84WTDD81 pKa = 2.65II82 pKa = 3.42

Molecular weight: 9.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5980

0

5980

1817401

21

3066

303.9

34.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.538 ± 0.04

1.553 ± 0.014

5.486 ± 0.025

8.026 ± 0.037

4.165 ± 0.025

7.152 ± 0.038

1.804 ± 0.014

6.978 ± 0.034

6.477 ± 0.031

9.15 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.126 ± 0.018

4.089 ± 0.022

3.37 ± 0.017

3.454 ± 0.017

5.127 ± 0.029

5.818 ± 0.032

5.063 ± 0.022

6.429 ± 0.026

0.998 ± 0.012

4.197 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski