Avian paramyxovirus 14

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Avian metaavulavirus 14

Average proteome isoelectric point is 5.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L5YIM1|A0A1L5YIM1_9MONO Isoform of A0A1L5YIL7 W protein OS=Avian paramyxovirus 14 OX=1928005 GN=P PE=4 SV=1
MM1 pKa = 7.93DD2 pKa = 5.21FSDD5 pKa = 4.51DD6 pKa = 3.99NEE8 pKa = 4.13ITEE11 pKa = 4.89LLNISLDD18 pKa = 3.99TINKK22 pKa = 7.87IQHH25 pKa = 6.47AEE27 pKa = 4.15DD28 pKa = 3.71IKK30 pKa = 10.93PKK32 pKa = 9.93TVGKK36 pKa = 10.2SAIKK40 pKa = 10.05PGNTKK45 pKa = 10.64ALTKK49 pKa = 10.38AWEE52 pKa = 4.64DD53 pKa = 3.76DD54 pKa = 4.09SNTTSDD60 pKa = 3.07NTQNDD65 pKa = 3.08VRR67 pKa = 11.84GNSSAASNAQQSKK80 pKa = 10.21EE81 pKa = 3.88EE82 pKa = 4.38SGPEE86 pKa = 3.96TRR88 pKa = 11.84PEE90 pKa = 3.99TAGVEE95 pKa = 4.53VPSDD99 pKa = 3.76PTKK102 pKa = 10.82SSPDD106 pKa = 3.27QAEE109 pKa = 4.5TGWSRR114 pKa = 11.84GSNLDD119 pKa = 3.18KK120 pKa = 10.82TLEE123 pKa = 4.07NLEE126 pKa = 4.32KK127 pKa = 10.07ATSNRR132 pKa = 11.84VSDD135 pKa = 3.61QTQKK139 pKa = 10.51VLKK142 pKa = 8.93GGPVARR148 pKa = 11.84DD149 pKa = 3.14PLLRR153 pKa = 11.84RR154 pKa = 11.84PRR156 pKa = 3.81

Molecular weight: 16.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L5YIM9|A0A1L5YIM9_9MONO RNA-directed RNA polymerase L OS=Avian paramyxovirus 14 OX=1928005 GN=L PE=3 SV=1
MM1 pKa = 7.63ASASVNLFVDD11 pKa = 4.87EE12 pKa = 4.62SAPSSSLLAFPIVTKK27 pKa = 10.92DD28 pKa = 3.08NGSGGKK34 pKa = 9.57ALQPQIRR41 pKa = 11.84IAYY44 pKa = 8.16HH45 pKa = 6.4GEE47 pKa = 3.93VQGSKK52 pKa = 9.79RR53 pKa = 11.84SVMFVNCYY61 pKa = 10.45GFIEE65 pKa = 5.17DD66 pKa = 3.83YY67 pKa = 10.97SDD69 pKa = 3.78RR70 pKa = 11.84NEE72 pKa = 4.2GFLNPDD78 pKa = 3.64EE79 pKa = 4.61PPKK82 pKa = 10.58PRR84 pKa = 11.84TVTAACLTIGSVSGDD99 pKa = 3.39LDD101 pKa = 3.49PRR103 pKa = 11.84EE104 pKa = 4.07VARR107 pKa = 11.84ACFDD111 pKa = 4.09LDD113 pKa = 3.7VKK115 pKa = 11.06VKK117 pKa = 10.33INADD121 pKa = 3.04SRR123 pKa = 11.84EE124 pKa = 3.66RR125 pKa = 11.84VAFSFRR131 pKa = 11.84TKK133 pKa = 10.03PALLISSRR141 pKa = 11.84VISGGGIVLSAEE153 pKa = 4.33DD154 pKa = 4.03NIKK157 pKa = 10.74CVGKK161 pKa = 9.01MAVDD165 pKa = 3.03KK166 pKa = 10.57DD167 pKa = 3.48YY168 pKa = 11.22RR169 pKa = 11.84LRR171 pKa = 11.84IMFCSTTFLHH181 pKa = 6.39QSKK184 pKa = 10.18LFKK187 pKa = 10.57AQPAVMNLRR196 pKa = 11.84SSMLLALQVAVTIKK210 pKa = 10.38VDD212 pKa = 3.37IPASHH217 pKa = 7.11PHH219 pKa = 6.15AKK221 pKa = 10.07YY222 pKa = 10.38LSKK225 pKa = 11.23EE226 pKa = 3.84GDD228 pKa = 3.7DD229 pKa = 4.25LVAHH233 pKa = 6.07VWIHH237 pKa = 4.34VCNFKK242 pKa = 10.04RR243 pKa = 11.84TDD245 pKa = 3.1RR246 pKa = 11.84RR247 pKa = 11.84GEE249 pKa = 3.91TRR251 pKa = 11.84TVEE254 pKa = 3.92NLKK257 pKa = 10.57EE258 pKa = 4.1KK259 pKa = 9.69VRR261 pKa = 11.84RR262 pKa = 11.84MGLKK266 pKa = 10.33VSLLDD271 pKa = 3.29LWGPTIIIEE280 pKa = 4.34ATGTMTKK287 pKa = 10.22YY288 pKa = 11.05ALGFFSDD295 pKa = 4.57SKK297 pKa = 9.69TSCHH301 pKa = 6.82PISKK305 pKa = 10.19ASPEE309 pKa = 4.15TAKK312 pKa = 10.94LLWSATGEE320 pKa = 4.25VKK322 pKa = 10.57RR323 pKa = 11.84AVAVIQSSDD332 pKa = 2.88KK333 pKa = 10.75RR334 pKa = 11.84ALLTEE339 pKa = 5.04DD340 pKa = 3.92DD341 pKa = 4.77LLVKK345 pKa = 10.53GAMTTQAGGLKK356 pKa = 10.03EE357 pKa = 3.85FSLFKK362 pKa = 10.73KK363 pKa = 10.56

Molecular weight: 39.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

2

8

5006

156

2243

625.8

69.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.752 ± 0.655

2.058 ± 0.313

5.453 ± 0.382

5.733 ± 0.255

3.256 ± 0.422

6.312 ± 0.294

1.578 ± 0.227

7.231 ± 0.63

5.773 ± 0.351

9.409 ± 0.824

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.277 ± 0.323

4.914 ± 0.449

4.095 ± 0.408

4.055 ± 0.307

4.874 ± 0.409

9.189 ± 0.239

6.792 ± 0.592

6.153 ± 0.385

1.179 ± 0.231

2.917 ± 0.434
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski