Saimiriine herpesvirus 2 (strain 11) (SaHV-2) (Herpesvirus saimiri)

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Rhadinovirus; Saimiriine gammaherpesvirus 2

Average proteome isoelectric point is 6.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 77 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P24913|VG10_SHV21 Uncharacterized gene 10 protein OS=Saimiriine herpesvirus 2 (strain 11) OX=10383 GN=10 PE=4 SV=1
MM1 pKa = 7.34TEE3 pKa = 3.6IFLFHH8 pKa = 6.92LKK10 pKa = 10.29AKK12 pKa = 10.36HH13 pKa = 6.27KK14 pKa = 10.39LLQAEE19 pKa = 4.35EE20 pKa = 4.35NNYY23 pKa = 10.81SNDD26 pKa = 3.27PVYY29 pKa = 11.09EE30 pKa = 4.34EE31 pKa = 4.12IQPLSEE37 pKa = 3.79EE38 pKa = 4.58CNRR41 pKa = 11.84NTTSLNDD48 pKa = 3.72SIYY51 pKa = 11.25DD52 pKa = 3.69DD53 pKa = 3.59VCYY56 pKa = 10.55PEE58 pKa = 6.71DD59 pKa = 4.32DD60 pKa = 4.55MYY62 pKa = 11.89DD63 pKa = 4.08DD64 pKa = 4.45GCGAYY69 pKa = 8.67TRR71 pKa = 11.84LDD73 pKa = 3.52ASRR76 pKa = 11.84VDD78 pKa = 3.6YY79 pKa = 10.98GQLRR83 pKa = 11.84TCNGDD88 pKa = 3.08SHH90 pKa = 8.46IYY92 pKa = 10.37EE93 pKa = 4.73EE94 pKa = 4.58IGG96 pKa = 3.27

Molecular weight: 11.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q01006|VG23_SHV21 Uncharacterized gene 23 protein OS=Saimiriine herpesvirus 2 (strain 11) OX=10383 GN=23 PE=3 SV=1
MM1 pKa = 7.48LSVIKK6 pKa = 10.65QRR8 pKa = 11.84DD9 pKa = 3.82KK10 pKa = 11.35EE11 pKa = 4.44VLAHH15 pKa = 6.66LPNKK19 pKa = 10.19RR20 pKa = 11.84KK21 pKa = 9.34IAGNKK26 pKa = 8.8AHH28 pKa = 7.21LEE30 pKa = 4.33TYY32 pKa = 10.34KK33 pKa = 10.94KK34 pKa = 9.52LAKK37 pKa = 8.8YY38 pKa = 7.35TVSASIFKK46 pKa = 10.11FLSISHH52 pKa = 7.1PCPLRR57 pKa = 11.84AKK59 pKa = 8.75TRR61 pKa = 11.84LFFEE65 pKa = 4.32VSLGNRR71 pKa = 11.84IADD74 pKa = 3.5CVMLTSCGEE83 pKa = 3.8TRR85 pKa = 11.84ICYY88 pKa = 9.91VIEE91 pKa = 5.04LKK93 pKa = 9.68TCMTSNLDD101 pKa = 4.08LISDD105 pKa = 3.47IRR107 pKa = 11.84KK108 pKa = 8.14SQRR111 pKa = 11.84SQGLCQLADD120 pKa = 3.54TVNFIHH126 pKa = 6.91NYY128 pKa = 9.98APLGRR133 pKa = 11.84QAWTVLPILIFKK145 pKa = 8.45SQKK148 pKa = 7.13TLKK151 pKa = 8.48TLHH154 pKa = 6.58IEE156 pKa = 4.28TPKK159 pKa = 10.59FPVNLTHH166 pKa = 6.84TSEE169 pKa = 4.31EE170 pKa = 4.15KK171 pKa = 10.67LSCFLWSRR179 pKa = 11.84ADD181 pKa = 3.27VEE183 pKa = 4.21IRR185 pKa = 11.84KK186 pKa = 9.68KK187 pKa = 10.08IHH189 pKa = 6.44LAPKK193 pKa = 9.12PKK195 pKa = 10.13RR196 pKa = 11.84IFKK199 pKa = 9.66WDD201 pKa = 3.45SLLDD205 pKa = 3.74STSTEE210 pKa = 3.56HH211 pKa = 6.05SAYY214 pKa = 9.45RR215 pKa = 11.84QKK217 pKa = 11.03LIEE220 pKa = 4.22RR221 pKa = 11.84NKK223 pKa = 10.25KK224 pKa = 9.85KK225 pKa = 10.71CFTLQNQTSKK235 pKa = 10.68FRR237 pKa = 11.84DD238 pKa = 3.43RR239 pKa = 11.84TNKK242 pKa = 9.84KK243 pKa = 10.8SNDD246 pKa = 3.36QLRR249 pKa = 11.84ARR251 pKa = 11.84QANARR256 pKa = 11.84PCKK259 pKa = 10.09KK260 pKa = 9.73KK261 pKa = 9.4QHH263 pKa = 5.06NNKK266 pKa = 9.67RR267 pKa = 11.84LRR269 pKa = 11.84NNRR272 pKa = 11.84KK273 pKa = 9.16HH274 pKa = 5.69GGKK277 pKa = 9.74VSRR280 pKa = 11.84LTTTTSFSSEE290 pKa = 3.91AAFSNYY296 pKa = 9.01PVSTHH301 pKa = 6.31KK302 pKa = 10.91LL303 pKa = 3.32

Molecular weight: 34.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

75

2

77

33737

66

2469

438.1

49.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.166 ± 0.186

2.739 ± 0.236

4.716 ± 0.281

5.798 ± 0.54

4.829 ± 0.192

3.957 ± 0.291

2.709 ± 0.111

7.078 ± 0.251

6.696 ± 0.235

10.28 ± 0.261

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.214 ± 0.124

5.49 ± 0.164

5.054 ± 0.199

3.907 ± 0.175

3.246 ± 0.181

8.332 ± 0.204

6.835 ± 0.28

6.07 ± 0.209

1.052 ± 0.065

3.833 ± 0.158
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski