Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus; Corallococcus coralloides

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8019 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H8N2B4|H8N2B4_CORCM Ribulose-phosphate 3-epimerase OS=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) OX=1144275 GN=rpe PE=3 SV=1
MM1 pKa = 7.33QLDD4 pKa = 3.95DD5 pKa = 3.86QQTPNLTSTGVNGATGTNGAPGGPGGTGTQGPSGSDD41 pKa = 3.79GSCGACNSQPGNGGTGGTGITGGDD65 pKa = 3.31ASAGTTGLDD74 pKa = 3.33APDD77 pKa = 4.52VIFQVTNISGNFLVAVGGGDD97 pKa = 3.33GGAGGTGGAGGQGGAGGPAGNTSNNCTQAANQGAGGKK134 pKa = 9.62GGNGGKK140 pKa = 10.16GGNGGNGGNGGTVFIYY156 pKa = 10.7YY157 pKa = 7.82QTLTPGSSTQLVRR170 pKa = 11.84TVGQGGAAGQGGAAGSPGQGNGNSGSGSPGSNGAPGSNGTQGQVQFVQSSNTSLFII226 pKa = 5.31

Molecular weight: 20.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H8MMJ8|H8MMJ8_CORCM Succinyl-diaminopimelate desuccinylase OS=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) OX=1144275 GN=dapE2 PE=4 SV=1
MM1 pKa = 7.19HH2 pKa = 7.68AEE4 pKa = 4.91SNMQDD9 pKa = 3.57PNEE12 pKa = 4.35TPSSNTMLPVGEE24 pKa = 4.27ATPSRR29 pKa = 11.84RR30 pKa = 11.84RR31 pKa = 11.84SSGARR36 pKa = 11.84KK37 pKa = 8.99GARR40 pKa = 11.84KK41 pKa = 9.65ASSRR45 pKa = 11.84RR46 pKa = 11.84TGAAKK51 pKa = 10.33KK52 pKa = 8.82ATSKK56 pKa = 9.95RR57 pKa = 11.84TTAKK61 pKa = 9.97KK62 pKa = 10.19AAGKK66 pKa = 8.51RR67 pKa = 11.84TAKK70 pKa = 10.13KK71 pKa = 10.03AAGKK75 pKa = 10.33RR76 pKa = 11.84GTAKK80 pKa = 10.42RR81 pKa = 11.84GAAKK85 pKa = 10.3KK86 pKa = 9.06ATAKK90 pKa = 10.31RR91 pKa = 11.84GARR94 pKa = 11.84KK95 pKa = 9.77APARR99 pKa = 11.84RR100 pKa = 11.84AAAGRR105 pKa = 11.84TARR108 pKa = 11.84KK109 pKa = 7.37TSARR113 pKa = 11.84KK114 pKa = 9.39SPARR118 pKa = 11.84KK119 pKa = 7.25TSARR123 pKa = 11.84KK124 pKa = 9.21SSARR128 pKa = 11.84RR129 pKa = 11.84STRR132 pKa = 11.84RR133 pKa = 3.13

Molecular weight: 14.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8019

0

8019

3071555

39

12261

383.0

41.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.146 ± 0.041

0.902 ± 0.014

5.275 ± 0.022

6.202 ± 0.032

3.361 ± 0.016

8.725 ± 0.031

2.101 ± 0.012

2.81 ± 0.02

3.063 ± 0.028

10.959 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.933 ± 0.011

2.167 ± 0.02

6.238 ± 0.028

3.509 ± 0.019

7.745 ± 0.03

5.559 ± 0.021

5.644 ± 0.024

8.201 ± 0.03

1.395 ± 0.011

2.064 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski