Amino acid dipepetide frequency for Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	14.591AlaAla: 14.591 ± 0.137	1.287AlaCys: 1.287 ± 0.023	5.344AlaAsp: 5.344 ± 0.048	7.221AlaGlu: 7.221 ± 0.093	4.107AlaPhe: 4.107 ± 0.04	9.776AlaGly: 9.776 ± 0.077	2.493AlaHis: 2.493 ± 0.033	3.185AlaIle: 3.185 ± 0.039	3.831AlaLys: 3.831 ± 0.053	15.011AlaLeu: 15.011 ± 0.118	2.49AlaMet: 2.49 ± 0.033	2.447AlaAsn: 2.447 ± 0.034	7.606AlaPro: 7.606 ± 0.074	4.654AlaGln: 4.654 ± 0.045	10.42AlaArg: 10.42 ± 0.104	7.011AlaSer: 7.011 ± 0.053	6.35AlaThr: 6.35 ± 0.067	9.346AlaVal: 9.346 ± 0.066	1.876AlaTrp: 1.876 ± 0.027	2.414AlaTyr: 2.414 ± 0.035	0.0AlaXaa: 0.0 ± 0.0
Cys	1.104CysAla: 1.104 ± 0.023	0.093CysCys: 0.093 ± 0.006	0.524CysAsp: 0.524 ± 0.02	0.521CysGlu: 0.521 ± 0.015	0.313CysPhe: 0.313 ± 0.01	1.013CysGly: 1.013 ± 0.031	0.244CysHis: 0.244 ± 0.011	0.298CysIle: 0.298 ± 0.01	0.203CysLys: 0.203 ± 0.01	0.81CysLeu: 0.81 ± 0.016	0.142CysMet: 0.142 ± 0.007	0.248CysAsn: 0.248 ± 0.012	0.51CysPro: 0.51 ± 0.019	0.29CysGln: 0.29 ± 0.011	0.616CysArg: 0.616 ± 0.018	0.518CysSer: 0.518 ± 0.017	0.535CysThr: 0.535 ± 0.014	0.735CysVal: 0.735 ± 0.016	0.113CysTrp: 0.113 ± 0.007	0.184CysTyr: 0.184 ± 0.008	0.0CysXaa: 0.0 ± 0.0
Asp	7.968AspAla: 7.968 ± 0.068	0.484AspCys: 0.484 ± 0.018	2.67AspAsp: 2.67 ± 0.041	3.102AspGlu: 3.102 ± 0.046	2.062AspPhe: 2.062 ± 0.026	5.311AspGly: 5.311 ± 0.068	0.868AspHis: 0.868 ± 0.019	1.681AspIle: 1.681 ± 0.027	1.274AspLys: 1.274 ± 0.026	5.51AspLeu: 5.51 ± 0.043	0.842AspMet: 0.842 ± 0.019	0.999AspAsn: 0.999 ± 0.024	3.226AspPro: 3.226 ± 0.04	1.286AspGln: 1.286 ± 0.025	3.323AspArg: 3.323 ± 0.033	2.529AspSer: 2.529 ± 0.031	2.824AspThr: 2.824 ± 0.035	4.929AspVal: 4.929 ± 0.043	0.782AspTrp: 0.782 ± 0.018	1.079AspTyr: 1.079 ± 0.019	0.0AspXaa: 0.0 ± 0.0
Glu	8.794GluAla: 8.794 ± 0.111	0.395GluCys: 0.395 ± 0.012	3.355GluAsp: 3.355 ± 0.036	4.018GluGlu: 4.018 ± 0.081	1.479GluPhe: 1.479 ± 0.026	5.326GluGly: 5.326 ± 0.053	1.401GluHis: 1.401 ± 0.025	1.498GluIle: 1.498 ± 0.027	2.122GluLys: 2.122 ± 0.031	6.972GluLeu: 6.972 ± 0.062	1.043GluMet: 1.043 ± 0.02	1.114GluAsn: 1.114 ± 0.021	3.444GluPro: 3.444 ± 0.04	2.566GluGln: 2.566 ± 0.035	5.767GluArg: 5.767 ± 0.062	3.0GluSer: 3.0 ± 0.03	2.839GluThr: 2.839 ± 0.037	5.064GluVal: 5.064 ± 0.05	0.758GluTrp: 0.758 ± 0.023	1.066GluTyr: 1.066 ± 0.023	0.0GluXaa: 0.0 ± 0.0
Phe	3.613PheAla: 3.613 ± 0.038	0.315PheCys: 0.315 ± 0.01	2.133PheAsp: 2.133 ± 0.031	2.111PheGlu: 2.111 ± 0.035	1.401PhePhe: 1.401 ± 0.022	2.819PheGly: 2.819 ± 0.042	0.8PheHis: 0.8 ± 0.018	1.218PheIle: 1.218 ± 0.021	0.938PheLys: 0.938 ± 0.019	3.328PheLeu: 3.328 ± 0.04	0.613PheMet: 0.613 ± 0.014	0.955PheAsn: 0.955 ± 0.019	1.634PhePro: 1.634 ± 0.026	1.376PheGln: 1.376 ± 0.026	2.288PheArg: 2.288 ± 0.028	2.028PheSer: 2.028 ± 0.023	2.276PheThr: 2.276 ± 0.031	2.622PheVal: 2.622 ± 0.029	0.425PheTrp: 0.425 ± 0.014	0.72PheTyr: 0.72 ± 0.016	0.0PheXaa: 0.0 ± 0.0
Gly	9.679GlyAla: 9.679 ± 0.069	0.972GlyCys: 0.972 ± 0.021	4.347GlyAsp: 4.347 ± 0.045	4.891GlyGlu: 4.891 ± 0.05	3.147GlyPhe: 3.147 ± 0.036	7.875GlyGly: 7.875 ± 0.087	1.876GlyHis: 1.876 ± 0.027	2.888GlyIle: 2.888 ± 0.04	2.887GlyLys: 2.887 ± 0.038	9.063GlyLeu: 9.063 ± 0.073	2.012GlyMet: 2.012 ± 0.03	2.102GlyAsn: 2.102 ± 0.039	4.566GlyPro: 4.566 ± 0.045	3.246GlyGln: 3.246 ± 0.036	6.542GlyArg: 6.542 ± 0.057	4.835GlySer: 4.835 ± 0.042	5.974GlyThr: 5.974 ± 0.071	6.875GlyVal: 6.875 ± 0.057	1.432GlyTrp: 1.432 ± 0.024	2.045GlyTyr: 2.045 ± 0.025	0.0GlyXaa: 0.0 ± 0.0
His	2.578HisAla: 2.578 ± 0.035	0.201HisCys: 0.201 ± 0.01	1.013HisAsp: 1.013 ± 0.019	1.184HisGlu: 1.184 ± 0.021	0.84HisPhe: 0.84 ± 0.015	1.986HisGly: 1.986 ± 0.027	0.64HisHis: 0.64 ± 0.019	0.591HisIle: 0.591 ± 0.013	0.401HisLys: 0.401 ± 0.013	2.425HisLeu: 2.425 ± 0.04	0.322HisMet: 0.322 ± 0.01	0.375HisAsn: 0.375 ± 0.011	1.588HisPro: 1.588 ± 0.026	0.696HisGln: 0.696 ± 0.02	1.661HisArg: 1.661 ± 0.026	0.942HisSer: 0.942 ± 0.02	0.982HisThr: 0.982 ± 0.02	1.742HisVal: 1.742 ± 0.022	0.322HisTrp: 0.322 ± 0.01	0.518HisTyr: 0.518 ± 0.015	0.0HisXaa: 0.0 ± 0.0
Ile	3.555IleAla: 3.555 ± 0.043	0.254IleCys: 0.254 ± 0.009	1.725IleAsp: 1.725 ± 0.026	1.802IleGlu: 1.802 ± 0.027	0.838IlePhe: 0.838 ± 0.019	2.261IleGly: 2.261 ± 0.034	0.764IleHis: 0.764 ± 0.016	1.053IleIle: 1.053 ± 0.021	0.745IleLys: 0.745 ± 0.019	2.559IleLeu: 2.559 ± 0.035	0.338IleMet: 0.338 ± 0.011	0.814IleAsn: 0.814 ± 0.02	1.926IlePro: 1.926 ± 0.023	1.143IleGln: 1.143 ± 0.019	1.959IleArg: 1.959 ± 0.03	1.567IleSer: 1.567 ± 0.026	1.749IleThr: 1.749 ± 0.03	2.147IleVal: 2.147 ± 0.032	0.3IleTrp: 0.3 ± 0.011	0.599IleTyr: 0.599 ± 0.015	0.0IleXaa: 0.0 ± 0.0
Lys	4.013LysAla: 4.013 ± 0.046	0.193LysCys: 0.193 ± 0.009	1.911LysAsp: 1.911 ± 0.032	1.844LysGlu: 1.844 ± 0.031	0.679LysPhe: 0.679 ± 0.017	2.656LysGly: 2.656 ± 0.031	0.619LysHis: 0.619 ± 0.016	0.679LysIle: 0.679 ± 0.019	1.352LysLys: 1.352 ± 0.033	3.351LysLeu: 3.351 ± 0.04	0.574LysMet: 0.574 ± 0.015	0.734LysAsn: 0.734 ± 0.021	2.098LysPro: 2.098 ± 0.034	1.167LysGln: 1.167 ± 0.022	2.264LysArg: 2.264 ± 0.033	1.443LysSer: 1.443 ± 0.026	1.621LysThr: 1.621 ± 0.027	2.56LysVal: 2.56 ± 0.034	0.313LysTrp: 0.313 ± 0.011	0.562LysTyr: 0.562 ± 0.016	0.0LysXaa: 0.0 ± 0.0
Leu	13.415LeuAla: 13.415 ± 0.104	0.972LeuCys: 0.972 ± 0.018	5.967LeuAsp: 5.967 ± 0.049	7.273LeuGlu: 7.273 ± 0.072	3.62LeuPhe: 3.62 ± 0.038	9.447LeuGly: 9.447 ± 0.065	2.277LeuHis: 2.277 ± 0.028	2.811LeuIle: 2.811 ± 0.034	3.87LeuLys: 3.87 ± 0.043	11.489LeuLeu: 11.489 ± 0.101	2.013LeuMet: 2.013 ± 0.03	2.221LeuAsn: 2.221 ± 0.033	6.819LeuPro: 6.819 ± 0.074	3.486LeuGln: 3.486 ± 0.041	8.76LeuArg: 8.76 ± 0.077	6.829LeuSer: 6.829 ± 0.053	6.369LeuThr: 6.369 ± 0.056	8.378LeuVal: 8.378 ± 0.063	1.37LeuTrp: 1.37 ± 0.026	2.205LeuTyr: 2.205 ± 0.031	0.0LeuXaa: 0.0 ± 0.0
Met	2.372MetAla: 2.372 ± 0.032	0.112MetCys: 0.112 ± 0.005	1.078MetAsp: 1.078 ± 0.019	1.184MetGlu: 1.184 ± 0.02	0.477MetPhe: 0.477 ± 0.013	1.759MetGly: 1.759 ± 0.028	0.39MetHis: 0.39 ± 0.013	0.412MetIle: 0.412 ± 0.012	0.828MetLys: 0.828 ± 0.019	1.955MetLeu: 1.955 ± 0.029	0.405MetMet: 0.405 ± 0.012	0.543MetAsn: 0.543 ± 0.014	1.249MetPro: 1.249 ± 0.019	0.61MetGln: 0.61 ± 0.015	1.619MetArg: 1.619 ± 0.021	1.31MetSer: 1.31 ± 0.022	1.172MetThr: 1.172 ± 0.021	1.412MetVal: 1.412 ± 0.024	0.173MetTrp: 0.173 ± 0.007	0.264MetTyr: 0.264 ± 0.009	0.0MetXaa: 0.0 ± 0.0
Asn	2.749AsnAla: 2.749 ± 0.031	0.211AsnCys: 0.211 ± 0.009	1.09AsnAsp: 1.09 ± 0.023	1.079AsnGlu: 1.079 ± 0.021	0.713AsnPhe: 0.713 ± 0.016	2.131AsnGly: 2.131 ± 0.04	0.442AsnHis: 0.442 ± 0.013	0.787AsnIle: 0.787 ± 0.021	0.526AsnLys: 0.526 ± 0.017	2.272AsnLeu: 2.272 ± 0.028	0.337AsnMet: 0.337 ± 0.01	0.639AsnAsn: 0.639 ± 0.019	1.632AsnPro: 1.632 ± 0.029	0.717AsnGln: 0.717 ± 0.017	1.374AsnArg: 1.374 ± 0.025	1.005AsnSer: 1.005 ± 0.02	1.337AsnThr: 1.337 ± 0.027	1.825AsnVal: 1.825 ± 0.034	0.286AsnTrp: 0.286 ± 0.012	0.514AsnTyr: 0.514 ± 0.015	0.0AsnXaa: 0.0 ± 0.0
Pro	7.488ProAla: 7.488 ± 0.067	0.369ProCys: 0.369 ± 0.013	3.804ProAsp: 3.804 ± 0.038	4.964ProGlu: 4.964 ± 0.051	2.002ProPhe: 2.002 ± 0.028	5.959ProGly: 5.959 ± 0.05	1.118ProHis: 1.118 ± 0.018	1.398ProIle: 1.398 ± 0.023	1.688ProLys: 1.688 ± 0.027	6.032ProLeu: 6.032 ± 0.068	1.282ProMet: 1.282 ± 0.021	1.193ProAsn: 1.193 ± 0.025	4.685ProPro: 4.685 ± 0.071	1.9ProGln: 1.9 ± 0.028	4.193ProArg: 4.193 ± 0.048	3.824ProSer: 3.824 ± 0.039	3.271ProThr: 3.271 ± 0.04	5.23ProVal: 5.23 ± 0.058	0.86ProTrp: 0.86 ± 0.022	1.119ProTyr: 1.119 ± 0.021	0.0ProXaa: 0.0 ± 0.0
Gln	4.708GlnAla: 4.708 ± 0.052	0.27GlnCys: 0.27 ± 0.013	1.78GlnAsp: 1.78 ± 0.023	2.149GlnGlu: 2.149 ± 0.028	0.849GlnPhe: 0.849 ± 0.019	3.344GlnGly: 3.344 ± 0.038	0.694GlnHis: 0.694 ± 0.014	0.705GlnIle: 0.705 ± 0.018	1.152GlnLys: 1.152 ± 0.024	3.695GlnLeu: 3.695 ± 0.051	0.613GlnMet: 0.613 ± 0.016	0.652GlnAsn: 0.652 ± 0.015	2.179GlnPro: 2.179 ± 0.032	1.527GlnGln: 1.527 ± 0.03	3.017GlnArg: 3.017 ± 0.043	1.667GlnSer: 1.667 ± 0.027	1.544GlnThr: 1.544 ± 0.026	3.405GlnVal: 3.405 ± 0.046	0.491GlnTrp: 0.491 ± 0.014	0.653GlnTyr: 0.653 ± 0.015	0.0GlnXaa: 0.0 ± 0.0
Arg	8.945ArgAla: 8.945 ± 0.073	0.645ArgCys: 0.645 ± 0.017	3.883ArgAsp: 3.883 ± 0.036	5.455ArgGlu: 5.455 ± 0.058	3.105ArgPhe: 3.105 ± 0.039	5.443ArgGly: 5.443 ± 0.056	1.678ArgHis: 1.678 ± 0.026	2.865ArgIle: 2.865 ± 0.032	2.345ArgLys: 2.345 ± 0.034	8.816ArgLeu: 8.816 ± 0.1	2.071ArgMet: 2.071 ± 0.026	1.549ArgAsn: 1.549 ± 0.025	4.3ArgPro: 4.3 ± 0.051	2.673ArgGln: 2.673 ± 0.032	5.886ArgArg: 5.886 ± 0.059	3.764ArgSer: 3.764 ± 0.041	4.3ArgThr: 4.3 ± 0.046	6.558ArgVal: 6.558 ± 0.052	1.242ArgTrp: 1.242 ± 0.024	1.927ArgTyr: 1.927 ± 0.027	0.0ArgXaa: 0.0 ± 0.0
Ser	6.385SerAla: 6.385 ± 0.058	0.522SerCys: 0.522 ± 0.017	2.677SerAsp: 2.677 ± 0.034	2.995SerGlu: 2.995 ± 0.037	2.046SerPhe: 2.046 ± 0.026	5.526SerGly: 5.526 ± 0.054	1.148SerHis: 1.148 ± 0.02	1.693SerIle: 1.693 ± 0.023	1.426SerLys: 1.426 ± 0.025	6.263SerLeu: 6.263 ± 0.056	1.085SerMet: 1.085 ± 0.019	1.241SerAsn: 1.241 ± 0.023	3.7SerPro: 3.7 ± 0.036	1.852SerGln: 1.852 ± 0.027	4.241SerArg: 4.241 ± 0.038	3.372SerSer: 3.372 ± 0.045	3.218SerThr: 3.218 ± 0.05	4.32SerVal: 4.32 ± 0.047	0.766SerTrp: 0.766 ± 0.018	1.118SerTyr: 1.118 ± 0.024	0.0SerXaa: 0.0 ± 0.0
Thr	6.308ThrAla: 6.308 ± 0.065	0.599ThrCys: 0.599 ± 0.019	2.785ThrAsp: 2.785 ± 0.036	2.916ThrGlu: 2.916 ± 0.039	2.133ThrPhe: 2.133 ± 0.031	5.27ThrGly: 5.27 ± 0.052	1.163ThrHis: 1.163 ± 0.018	1.192ThrIle: 1.192 ± 0.023	1.294ThrLys: 1.294 ± 0.023	6.8ThrLeu: 6.8 ± 0.053	0.78ThrMet: 0.78 ± 0.017	1.158ThrAsn: 1.158 ± 0.022	4.486ThrPro: 4.486 ± 0.046	2.048ThrGln: 2.048 ± 0.028	3.969ThrArg: 3.969 ± 0.036	3.128ThrSer: 3.128 ± 0.041	3.096ThrThr: 3.096 ± 0.048	5.085ThrVal: 5.085 ± 0.056	0.894ThrTrp: 0.894 ± 0.021	1.336ThrTyr: 1.336 ± 0.026	0.0ThrXaa: 0.0 ± 0.0
Val	9.47ValAla: 9.47 ± 0.063	0.764ValCys: 0.764 ± 0.019	4.761ValAsp: 4.761 ± 0.045	5.4ValGlu: 5.4 ± 0.054	2.5ValPhe: 2.5 ± 0.032	6.444ValGly: 6.444 ± 0.054	1.696ValHis: 1.696 ± 0.024	2.303ValIle: 2.303 ± 0.027	2.685ValLys: 2.685 ± 0.034	9.365ValLeu: 9.365 ± 0.081	1.628ValMet: 1.628 ± 0.024	1.723ValAsn: 1.723 ± 0.023	5.027ValPro: 5.027 ± 0.057	2.584ValGln: 2.584 ± 0.031	6.576ValArg: 6.576 ± 0.058	4.746ValSer: 4.746 ± 0.051	4.928ValThr: 4.928 ± 0.057	6.886ValVal: 6.886 ± 0.057	0.969ValTrp: 0.969 ± 0.021	1.557ValTyr: 1.557 ± 0.024	0.0ValXaa: 0.0 ± 0.0
Trp	1.35TrpAla: 1.35 ± 0.028	0.152TrpCys: 0.152 ± 0.007	0.692TrpAsp: 0.692 ± 0.017	0.721TrpGlu: 0.721 ± 0.017	0.438TrpPhe: 0.438 ± 0.012	1.067TrpGly: 1.067 ± 0.02	0.29TrpHis: 0.29 ± 0.009	0.331TrpIle: 0.331 ± 0.012	0.578TrpLys: 0.578 ± 0.018	1.656TrpLeu: 1.656 ± 0.028	0.396TrpMet: 0.396 ± 0.011	0.449TrpAsn: 0.449 ± 0.013	0.652TrpPro: 0.652 ± 0.015	0.496TrpGln: 0.496 ± 0.017	1.228TrpArg: 1.228 ± 0.022	0.923TrpSer: 0.923 ± 0.018	0.901TrpThr: 0.901 ± 0.022	1.114TrpVal: 1.114 ± 0.022	0.249TrpTrp: 0.249 ± 0.01	0.265TrpTyr: 0.265 ± 0.011	0.0TrpXaa: 0.0 ± 0.0
Tyr	2.375TyrAla: 2.375 ± 0.033	0.204TyrCys: 0.204 ± 0.009	1.209TyrAsp: 1.209 ± 0.027	1.189TyrGlu: 1.189 ± 0.023	0.86TyrPhe: 0.86 ± 0.021	1.842TyrGly: 1.842 ± 0.026	0.404TyrHis: 0.404 ± 0.012	0.509TyrIle: 0.509 ± 0.016	0.487TyrLys: 0.487 ± 0.015	2.218TyrLeu: 2.218 ± 0.031	0.341TyrMet: 0.341 ± 0.013	0.511TyrAsn: 0.511 ± 0.016	1.05TyrPro: 1.05 ± 0.019	0.778TyrGln: 0.778 ± 0.019	1.747TyrArg: 1.747 ± 0.028	1.153TyrSer: 1.153 ± 0.022	1.154TyrThr: 1.154 ± 0.024	1.781TyrVal: 1.781 ± 0.031	0.331TyrTrp: 0.331 ± 0.01	0.499TyrTyr: 0.499 ± 0.014	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.0XaaXaa: 0.0 ± 0.0

Statistics based on 8019 proteins (3071555 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

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