Vulgatibacter incomptus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Vulgatibacteraceae; Vulgatibacter

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3704 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0K1PCL8|A0A0K1PCL8_9DELT ABC transporter related protein OS=Vulgatibacter incomptus OX=1391653 GN=AKJ08_1251 PE=4 SV=1
MM1 pKa = 7.07VLSLGGGCSPSVPDD15 pKa = 4.38GSPAASAGAGGEE27 pKa = 4.39GGGSGGKK34 pKa = 10.19GGGSGGVGGGSGGEE48 pKa = 4.09GGGTGGVGGGTGGVGGGGSTQSPGTHH74 pKa = 6.39FAATARR80 pKa = 11.84EE81 pKa = 4.13WSLPPDD87 pKa = 3.87SPSPDD92 pKa = 2.87GFFTFGYY99 pKa = 10.19YY100 pKa = 10.48DD101 pKa = 4.0WTTMDD106 pKa = 4.65LDD108 pKa = 4.57GDD110 pKa = 4.29GKK112 pKa = 10.06PDD114 pKa = 3.47LVVYY118 pKa = 9.49TGASEE123 pKa = 5.38SNPHH127 pKa = 5.46WLLYY131 pKa = 10.77KK132 pKa = 9.86NTGSGFAATPTEE144 pKa = 4.01WSLPPDD150 pKa = 3.85SPHH153 pKa = 7.01PDD155 pKa = 2.95GFFTLAYY162 pKa = 10.05YY163 pKa = 10.72DD164 pKa = 4.1WTTMDD169 pKa = 4.65LDD171 pKa = 4.57GDD173 pKa = 4.29GKK175 pKa = 10.12PDD177 pKa = 3.56LVVNTGASEE186 pKa = 4.22TNRR189 pKa = 11.84RR190 pKa = 11.84WLDD193 pKa = 3.38YY194 pKa = 10.9KK195 pKa = 10.63NTGTGFAATATEE207 pKa = 4.08WSLPADD213 pKa = 3.91SPHH216 pKa = 7.11PDD218 pKa = 2.93GFFTFSYY225 pKa = 10.79YY226 pKa = 11.07DD227 pKa = 3.63WTTMDD232 pKa = 4.65LDD234 pKa = 4.57GDD236 pKa = 4.29GKK238 pKa = 10.17PDD240 pKa = 3.53LVVNAGASEE249 pKa = 4.24TNRR252 pKa = 11.84RR253 pKa = 11.84WLLYY257 pKa = 10.33KK258 pKa = 9.93NTGSGFAATATEE270 pKa = 4.08WSLPADD276 pKa = 3.66SPFPGGFFTFSYY288 pKa = 10.83YY289 pKa = 11.07DD290 pKa = 3.63WTTMDD295 pKa = 4.65LDD297 pKa = 4.57GDD299 pKa = 4.29GKK301 pKa = 10.06PDD303 pKa = 3.47LVVYY307 pKa = 9.49TGASEE312 pKa = 5.38SNPHH316 pKa = 5.46WLLYY320 pKa = 10.77KK321 pKa = 9.86NTGSGFAATATEE333 pKa = 4.2WSLPPDD339 pKa = 3.76SPSPNGFFTFSYY351 pKa = 10.77YY352 pKa = 11.07DD353 pKa = 3.63WTTMDD358 pKa = 4.65LDD360 pKa = 4.57GDD362 pKa = 4.29GKK364 pKa = 10.06PDD366 pKa = 3.47LVVYY370 pKa = 9.49TGASEE375 pKa = 5.39SNPHH379 pKa = 5.13WLFYY383 pKa = 11.12KK384 pKa = 9.72NTGSGFTATATEE396 pKa = 4.13WTLPADD402 pKa = 4.0SPHH405 pKa = 7.0PDD407 pKa = 2.97GFFTLAYY414 pKa = 10.05YY415 pKa = 10.72DD416 pKa = 4.1WTTMDD421 pKa = 4.65LDD423 pKa = 4.57GDD425 pKa = 4.29GKK427 pKa = 10.12PDD429 pKa = 3.56LVVNTGASEE438 pKa = 4.19TNRR441 pKa = 11.84RR442 pKa = 11.84WLLYY446 pKa = 10.79KK447 pKa = 9.29NTPP450 pKa = 3.29

Molecular weight: 47.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0K1PCI4|A0A0K1PCI4_9DELT Acyl carrier protein OS=Vulgatibacter incomptus OX=1391653 GN=acpP PE=3 SV=1
MM1 pKa = 7.44PVVSGSSVRR10 pKa = 11.84ASGRR14 pKa = 11.84GPAASAPGVTASGRR28 pKa = 11.84VRR30 pKa = 11.84AASDD34 pKa = 3.06RR35 pKa = 11.84RR36 pKa = 11.84ATATVRR42 pKa = 11.84DD43 pKa = 4.28RR44 pKa = 11.84TASAPGATATGRR56 pKa = 11.84ARR58 pKa = 11.84TASAPGATAIGRR70 pKa = 11.84GLAASGLRR78 pKa = 11.84ATAIGPALAASVRR91 pKa = 11.84RR92 pKa = 11.84ATATGRR98 pKa = 11.84ARR100 pKa = 11.84TALARR105 pKa = 11.84RR106 pKa = 11.84ATAIGRR112 pKa = 11.84ARR114 pKa = 11.84TALARR119 pKa = 11.84RR120 pKa = 11.84ATAIGRR126 pKa = 11.84ARR128 pKa = 11.84TALARR133 pKa = 11.84RR134 pKa = 11.84ATAIGRR140 pKa = 11.84GPADD144 pKa = 3.09SDD146 pKa = 3.91LRR148 pKa = 11.84VTAIDD153 pKa = 3.54RR154 pKa = 11.84ALAASDD160 pKa = 3.87RR161 pKa = 11.84PAAAIDD167 pKa = 3.62RR168 pKa = 11.84GPAVSDD174 pKa = 3.71PRR176 pKa = 11.84ATAIGRR182 pKa = 11.84ALAASDD188 pKa = 4.39LRR190 pKa = 11.84ATAIGRR196 pKa = 11.84ALAASDD202 pKa = 4.11LRR204 pKa = 11.84ASAIGRR210 pKa = 11.84ARR212 pKa = 11.84TAWARR217 pKa = 11.84RR218 pKa = 11.84ATAIGRR224 pKa = 11.84ALAASDD230 pKa = 4.39LRR232 pKa = 11.84ATAIGRR238 pKa = 11.84APAALDD244 pKa = 3.68LRR246 pKa = 11.84AMAIGRR252 pKa = 11.84ARR254 pKa = 11.84TASARR259 pKa = 11.84RR260 pKa = 11.84AMAIGLARR268 pKa = 11.84TASARR273 pKa = 11.84RR274 pKa = 11.84AMAIGRR280 pKa = 11.84ARR282 pKa = 11.84TASARR287 pKa = 11.84RR288 pKa = 11.84AMAIGLARR296 pKa = 11.84TASARR301 pKa = 11.84RR302 pKa = 11.84ATAIGRR308 pKa = 11.84ARR310 pKa = 11.84TASARR315 pKa = 11.84RR316 pKa = 11.84AMAIGRR322 pKa = 11.84ARR324 pKa = 11.84TALARR329 pKa = 11.84RR330 pKa = 11.84ATAIGRR336 pKa = 11.84ARR338 pKa = 11.84AASAPRR344 pKa = 11.84ATAIGRR350 pKa = 11.84APTASAPRR358 pKa = 11.84AMAIGRR364 pKa = 11.84ARR366 pKa = 11.84TASARR371 pKa = 11.84RR372 pKa = 11.84AMAIGRR378 pKa = 11.84ARR380 pKa = 11.84TALVRR385 pKa = 11.84RR386 pKa = 11.84ATAIGRR392 pKa = 11.84ARR394 pKa = 11.84AASVRR399 pKa = 11.84RR400 pKa = 11.84AMAIGRR406 pKa = 11.84ARR408 pKa = 11.84AASVRR413 pKa = 11.84RR414 pKa = 11.84AMAIGRR420 pKa = 11.84ARR422 pKa = 11.84ATSARR427 pKa = 11.84RR428 pKa = 11.84AMAIVRR434 pKa = 11.84ARR436 pKa = 11.84TASARR441 pKa = 11.84RR442 pKa = 11.84ATAIGRR448 pKa = 11.84ARR450 pKa = 11.84TASAPDD456 pKa = 3.42ATATAPIAASIGRR469 pKa = 11.84LVPARR474 pKa = 11.84PAMPRR479 pKa = 11.84GGLRR483 pKa = 11.84AAPIGVRR490 pKa = 11.84RR491 pKa = 11.84PGAAEE496 pKa = 3.64ATIGRR501 pKa = 11.84VAA503 pKa = 3.74

Molecular weight: 50.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3704

0

3704

1270377

37

3785

343.0

37.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.517 ± 0.066

1.036 ± 0.029

5.584 ± 0.032

6.777 ± 0.046

3.486 ± 0.023

9.322 ± 0.056

1.884 ± 0.018

4.02 ± 0.029

2.998 ± 0.039

10.398 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.761 ± 0.019

1.99 ± 0.024

5.714 ± 0.033

2.607 ± 0.022

8.173 ± 0.05

5.927 ± 0.042

4.831 ± 0.056

7.753 ± 0.037

1.32 ± 0.018

1.902 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski