Acrocarpospora pleiomorpha

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptosporangiales; Streptosporangiaceae; Acrocarpospora

Average proteome isoelectric point is 6.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10405 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5M3XNG9|A0A5M3XNG9_9ACTN Maltose/maltodextrin transport system permease protein OS=Acrocarpospora pleiomorpha OX=90975 GN=Aple_056630 PE=3 SV=1
MM1 pKa = 7.35SALRR5 pKa = 11.84SAAVVAAVLIFSTTIAVAPAYY26 pKa = 10.33AIDD29 pKa = 3.62TNAWVQGGEE38 pKa = 4.18LNYY41 pKa = 9.5TAAPGQVNHH50 pKa = 5.92VVFTRR55 pKa = 11.84TDD57 pKa = 3.18ANTYY61 pKa = 10.45LVDD64 pKa = 5.56DD65 pKa = 4.93IVAITPLEE73 pKa = 4.73GCTHH77 pKa = 6.79PNARR81 pKa = 11.84DD82 pKa = 3.43LTLVQCTAEE91 pKa = 4.29FGFGGQLIVDD101 pKa = 4.18VGDD104 pKa = 4.49LDD106 pKa = 6.36DD107 pKa = 4.61IVNPTGPNHH116 pKa = 6.7ALIGLGSGDD125 pKa = 4.18DD126 pKa = 3.34IAYY129 pKa = 8.7GFPGSVGSLVDD140 pKa = 4.06GGPGDD145 pKa = 4.99DD146 pKa = 5.56LIHH149 pKa = 6.7SGPGQHH155 pKa = 7.09LIDD158 pKa = 5.03GGTGTDD164 pKa = 3.32TVSYY168 pKa = 9.1AARR171 pKa = 11.84VAPVTVDD178 pKa = 5.11LAACPCGEE186 pKa = 4.38AGEE189 pKa = 5.02ADD191 pKa = 3.66TLNGVEE197 pKa = 4.05NVIGGSASDD206 pKa = 3.76TLTGDD211 pKa = 3.55TLANTLTGGGGNDD224 pKa = 3.46VIAGKK229 pKa = 10.44SGADD233 pKa = 3.49TLNGGIGTDD242 pKa = 3.58TLKK245 pKa = 11.21GGWGNDD251 pKa = 3.41TLNGGLGPDD260 pKa = 3.85TLTGGWGNDD269 pKa = 3.23TLTGGLGNDD278 pKa = 3.78TLRR281 pKa = 11.84GGSGNDD287 pKa = 3.46TLNGGVGFADD297 pKa = 4.2DD298 pKa = 4.33CNGGLGADD306 pKa = 3.71VEE308 pKa = 4.8IGCEE312 pKa = 3.82LL313 pKa = 3.63

Molecular weight: 30.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5M3Y297|A0A5M3Y297_9ACTN NADH-quinone oxidoreductase subunit I OS=Acrocarpospora pleiomorpha OX=90975 GN=nuoI2 PE=3 SV=1
MM1 pKa = 6.9TAAKK5 pKa = 10.21AGVRR9 pKa = 11.84TVSGRR14 pKa = 11.84IAAGKK19 pKa = 9.68AAGTKK24 pKa = 10.06KK25 pKa = 10.37SVAAGRR31 pKa = 11.84AATKK35 pKa = 9.46TAMAKK40 pKa = 9.02TAVAKK45 pKa = 10.43KK46 pKa = 10.27AVVKK50 pKa = 10.65KK51 pKa = 10.49AVAKK55 pKa = 8.94TAAGKK60 pKa = 9.72AAAKK64 pKa = 9.75KK65 pKa = 9.52AAAGGRR71 pKa = 11.84RR72 pKa = 11.84SVGSGGRR79 pKa = 11.84SS80 pKa = 2.98

Molecular weight: 7.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10405

0

10405

3444316

39

9382

331.0

35.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.904 ± 0.037

0.776 ± 0.007

5.834 ± 0.02

5.476 ± 0.024

2.956 ± 0.013

9.149 ± 0.024

2.206 ± 0.012

4.068 ± 0.016

2.043 ± 0.017

10.53 ± 0.033

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.881 ± 0.011

2.054 ± 0.017

5.948 ± 0.021

2.842 ± 0.013

7.829 ± 0.028

5.241 ± 0.018

6.054 ± 0.028

8.455 ± 0.024

1.594 ± 0.01

2.16 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski