Turnip curly top virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Turncurtovirus

Average proteome isoelectric point is 7.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|L0CSD0|L0CSD0_9GEMI Movement protein OS=Turnip curly top virus OX=859650 PE=4 SV=1
MM1 pKa = 7.42IWRR4 pKa = 11.84VNKK7 pKa = 10.0DD8 pKa = 3.35EE9 pKa = 4.01KK10 pKa = 10.39RR11 pKa = 11.84VRR13 pKa = 11.84AFRR16 pKa = 11.84YY17 pKa = 8.4KK18 pKa = 10.17KK19 pKa = 9.97RR20 pKa = 11.84RR21 pKa = 11.84FYY23 pKa = 11.51SLAEE27 pKa = 3.98YY28 pKa = 10.82LLAPLATHH36 pKa = 6.93LCKK39 pKa = 10.56ARR41 pKa = 11.84IFPDD45 pKa = 3.47DD46 pKa = 4.04KK47 pKa = 11.3YY48 pKa = 11.38LVPAYY53 pKa = 9.31TDD55 pKa = 3.2EE56 pKa = 5.01AYY58 pKa = 11.07SFLVFLKK65 pKa = 10.63EE66 pKa = 3.78EE67 pKa = 4.17TRR69 pKa = 11.84TPFQILKK76 pKa = 10.45DD77 pKa = 3.52EE78 pKa = 4.46WNVEE82 pKa = 4.15FKK84 pKa = 10.63EE85 pKa = 4.18IEE87 pKa = 4.16VEE89 pKa = 4.2LSRR92 pKa = 11.84LRR94 pKa = 11.84FDD96 pKa = 4.07PKK98 pKa = 11.14DD99 pKa = 3.77PGEE102 pKa = 4.15EE103 pKa = 4.15ACSEE107 pKa = 4.11EE108 pKa = 5.4SPVQQSSPVQSSSCEE123 pKa = 3.92TT124 pKa = 3.49

Molecular weight: 14.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|L0CRA1|L0CRA1_9GEMI Replication-associated protein OS=Turnip curly top virus OX=859650 PE=3 SV=1
MM1 pKa = 7.45SGTWSLKK8 pKa = 8.4RR9 pKa = 11.84SRR11 pKa = 11.84WNSPGYY17 pKa = 10.51DD18 pKa = 3.76LTPKK22 pKa = 10.03TPAKK26 pKa = 9.96RR27 pKa = 11.84PAVRR31 pKa = 11.84RR32 pKa = 11.84ALFNNQAQYY41 pKa = 11.39SRR43 pKa = 11.84VAARR47 pKa = 11.84RR48 pKa = 11.84RR49 pKa = 11.84WSKK52 pKa = 10.82VSVRR56 pKa = 11.84GNKK59 pKa = 9.29PYY61 pKa = 10.52RR62 pKa = 11.84SRR64 pKa = 11.84RR65 pKa = 11.84LKK67 pKa = 10.76ASDD70 pKa = 3.25YY71 pKa = 10.87QIYY74 pKa = 9.81KK75 pKa = 10.77DD76 pKa = 5.49KK77 pKa = 11.17IGGDD81 pKa = 3.69NGWTVTFSGDD91 pKa = 3.06CTMLNNYY98 pKa = 8.7VRR100 pKa = 11.84GIGRR104 pKa = 11.84DD105 pKa = 3.36QRR107 pKa = 11.84DD108 pKa = 3.3SVMTKK113 pKa = 7.87TAHH116 pKa = 4.22MHH118 pKa = 5.51FNGVLMANDD127 pKa = 4.52AFWEE131 pKa = 4.53APNYY135 pKa = 6.13MTMYY139 pKa = 10.36SWIILDD145 pKa = 4.08NDD147 pKa = 3.98PGGTFPKK154 pKa = 10.28PSDD157 pKa = 3.54IFDD160 pKa = 3.58MEE162 pKa = 4.48YY163 pKa = 10.97KK164 pKa = 9.98EE165 pKa = 4.46FPSMYY170 pKa = 9.81EE171 pKa = 3.57VAEE174 pKa = 4.3SVKK177 pKa = 10.65SRR179 pKa = 11.84FIVKK183 pKa = 10.19RR184 pKa = 11.84KK185 pKa = 7.01TEE187 pKa = 3.84HH188 pKa = 5.95YY189 pKa = 10.34LRR191 pKa = 11.84STGVAFGEE199 pKa = 4.24KK200 pKa = 9.68QNYY203 pKa = 7.41KK204 pKa = 10.24APNVGPIKK212 pKa = 10.58KK213 pKa = 9.24PIRR216 pKa = 11.84MKK218 pKa = 10.48FRR220 pKa = 11.84NIWQPSEE227 pKa = 3.97WKK229 pKa = 9.01DD230 pKa = 3.43TAGGKK235 pKa = 10.06YY236 pKa = 10.11EE237 pKa = 4.17DD238 pKa = 4.21LKK240 pKa = 11.25KK241 pKa = 10.83GALLYY246 pKa = 11.03VCICDD251 pKa = 3.71NKK253 pKa = 9.7ATQFSFNLKK262 pKa = 9.68GQWTMYY268 pKa = 10.19FINRR272 pKa = 11.84DD273 pKa = 3.02LMYY276 pKa = 11.06

Molecular weight: 32.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1138

85

371

189.7

21.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.921 ± 0.675

1.406 ± 0.224

5.097 ± 0.697

5.8 ± 0.938

4.833 ± 0.685

5.448 ± 0.723

3.427 ± 0.856

7.03 ± 1.027

6.678 ± 0.843

7.557 ± 0.897

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.285 ± 0.855

5.097 ± 0.652

5.8 ± 0.618

4.13 ± 0.426

6.415 ± 0.892

7.909 ± 1.077

5.536 ± 0.52

4.745 ± 0.576

1.845 ± 0.398

4.042 ± 0.663
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski