Candidimonas sp. SYP-B2681

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Candidimonas; unclassified Candidimonas

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3632 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A432DWA2|A0A432DWA2_9BURK Disulfide bond formation protein B OS=Candidimonas sp. SYP-B2681 OX=2497686 GN=EKL30_02860 PE=4 SV=1
MM1 pKa = 7.32NVHH4 pKa = 5.14SHH6 pKa = 5.75IVEE9 pKa = 4.15TLQQGVVLDD18 pKa = 3.88VSIEE22 pKa = 4.03DD23 pKa = 3.49LHH25 pKa = 7.01FRR27 pKa = 11.84AYY29 pKa = 10.38VVLSEE34 pKa = 4.18PDD36 pKa = 3.21INLVADD42 pKa = 4.64FVPPEE47 pKa = 4.0QFEE50 pKa = 4.16QDD52 pKa = 3.22GDD54 pKa = 3.98VHH56 pKa = 6.46VAAISHH62 pKa = 6.85PDD64 pKa = 3.3EE65 pKa = 4.0VHH67 pKa = 6.46EE68 pKa = 4.36QIQDD72 pKa = 2.87ITFNMNPGDD81 pKa = 3.74AAVFMCSDD89 pKa = 2.75QRR91 pKa = 11.84TYY93 pKa = 11.66LDD95 pKa = 3.49ALEE98 pKa = 5.17EE99 pKa = 4.37LGQSNNAIQDD109 pKa = 3.38

Molecular weight: 12.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A432DP70|A0A432DP70_9BURK CoA transferase OS=Candidimonas sp. SYP-B2681 OX=2497686 GN=EKL30_07455 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.0RR14 pKa = 11.84THH16 pKa = 5.76GFRR19 pKa = 11.84VRR21 pKa = 11.84MKK23 pKa = 9.39TRR25 pKa = 11.84GGRR28 pKa = 11.84AVINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.58GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3632

0

3632

1176441

24

2840

323.9

35.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.213 ± 0.044

0.926 ± 0.013

5.271 ± 0.03

5.254 ± 0.038

3.699 ± 0.026

7.954 ± 0.037

2.248 ± 0.021

5.545 ± 0.027

3.683 ± 0.035

10.59 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.603 ± 0.018

3.128 ± 0.022

4.96 ± 0.024

3.94 ± 0.028

6.143 ± 0.034

6.105 ± 0.025

5.323 ± 0.023

7.52 ± 0.035

1.387 ± 0.018

2.507 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski