Amino acid dipepetide frequency for Blackbird associated gemycircularvirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.082AlaAla: 3.082 ± 0.091
0.0AlaCys: 0.0 ± 0.0
3.082AlaAsp: 3.082 ± 2.023
4.622AlaGlu: 4.622 ± 0.92
4.622AlaPhe: 4.622 ± 0.92
6.163AlaGly: 6.163 ± 0.182
0.0AlaHis: 0.0 ± 0.0
4.622AlaIle: 4.622 ± 3.034
0.0AlaLys: 0.0 ± 0.0
4.622AlaLeu: 4.622 ± 0.92
3.082AlaMet: 3.082 ± 2.205
9.245AlaAsn: 9.245 ± 1.84
3.082AlaPro: 3.082 ± 2.205
6.163AlaGln: 6.163 ± 2.296
4.622AlaArg: 4.622 ± 1.194
3.082AlaSer: 3.082 ± 0.091
1.541AlaThr: 1.541 ± 1.103
4.622AlaVal: 4.622 ± 3.034
1.541AlaTrp: 1.541 ± 1.011
1.541AlaTyr: 1.541 ± 1.011
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
1.541CysPhe: 1.541 ± 1.103
1.541CysGly: 1.541 ± 1.011
0.0CysHis: 0.0 ± 0.0
3.082CysIle: 3.082 ± 2.023
0.0CysLys: 0.0 ± 0.0
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
1.541CysPro: 1.541 ± 1.103
1.541CysGln: 1.541 ± 1.011
0.0CysArg: 0.0 ± 0.0
0.0CysSer: 0.0 ± 0.0
1.541CysThr: 1.541 ± 1.011
1.541CysVal: 1.541 ± 1.011
0.0CysTrp: 0.0 ± 0.0
1.541CysTyr: 1.541 ± 1.103
0.0CysXaa: 0.0 ± 0.0
Asp
4.622AspAla: 4.622 ± 0.92
0.0AspCys: 0.0 ± 0.0
4.622AspAsp: 4.622 ± 1.194
1.541AspGlu: 1.541 ± 1.103
4.622AspPhe: 4.622 ± 0.92
7.704AspGly: 7.704 ± 2.943
3.082AspHis: 3.082 ± 2.023
3.082AspIle: 3.082 ± 0.091
1.541AspLys: 1.541 ± 1.103
3.082AspLeu: 3.082 ± 0.091
1.541AspMet: 1.541 ± 1.011
0.0AspAsn: 0.0 ± 0.0
4.622AspPro: 4.622 ± 3.034
1.541AspGln: 1.541 ± 1.011
0.0AspArg: 0.0 ± 0.0
1.541AspSer: 1.541 ± 1.103
4.622AspThr: 4.622 ± 1.194
6.163AspVal: 6.163 ± 4.045
1.541AspTrp: 1.541 ± 1.103
3.082AspTyr: 3.082 ± 0.091
0.0AspXaa: 0.0 ± 0.0
Glu
0.0GluAla: 0.0 ± 0.0
3.082GluCys: 3.082 ± 2.023
1.541GluAsp: 1.541 ± 1.011
1.541GluGlu: 1.541 ± 1.011
3.082GluPhe: 3.082 ± 2.023
4.622GluGly: 4.622 ± 3.034
1.541GluHis: 1.541 ± 1.011
1.541GluIle: 1.541 ± 1.011
0.0GluLys: 0.0 ± 0.0
9.245GluLeu: 9.245 ± 3.954
1.541GluMet: 1.541 ± 1.103
4.622GluAsn: 4.622 ± 3.308
0.0GluPro: 0.0 ± 0.0
1.541GluGln: 1.541 ± 1.103
3.082GluArg: 3.082 ± 0.091
0.0GluSer: 0.0 ± 0.0
3.082GluThr: 3.082 ± 2.205
1.541GluVal: 1.541 ± 1.011
1.541GluTrp: 1.541 ± 1.011
1.541GluTyr: 1.541 ± 1.011
0.0GluXaa: 0.0 ± 0.0
Phe
1.541PheAla: 1.541 ± 1.103
1.541PheCys: 1.541 ± 1.103
6.163PheAsp: 6.163 ± 1.931
1.541PheGlu: 1.541 ± 1.011
1.541PhePhe: 1.541 ± 1.011
1.541PheGly: 1.541 ± 1.011
4.622PheHis: 4.622 ± 1.194
1.541PheIle: 1.541 ± 1.103
1.541PheLys: 1.541 ± 1.103
1.541PheLeu: 1.541 ± 1.011
0.0PheMet: 0.0 ± 0.0
3.082PheAsn: 3.082 ± 2.205
0.0PhePro: 0.0 ± 0.0
0.0PheGln: 0.0 ± 0.0
6.163PheArg: 6.163 ± 1.931
4.622PheSer: 4.622 ± 1.194
1.541PheThr: 1.541 ± 1.103
3.082PheVal: 3.082 ± 2.023
1.541PheTrp: 1.541 ± 1.011
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
4.622GlyAla: 4.622 ± 0.92
1.541GlyCys: 1.541 ± 1.011
13.867GlyAsp: 13.867 ± 0.647
1.541GlyGlu: 1.541 ± 1.011
3.082GlyPhe: 3.082 ± 0.091
12.327GlyGly: 12.327 ± 1.749
0.0GlyHis: 0.0 ± 0.0
4.622GlyIle: 4.622 ± 1.194
3.082GlyLys: 3.082 ± 2.023
6.163GlyLeu: 6.163 ± 0.182
7.704GlyMet: 7.704 ± 3.399
4.622GlyAsn: 4.622 ± 0.92
0.0GlyPro: 0.0 ± 0.0
3.082GlyGln: 3.082 ± 2.023
10.786GlyArg: 10.786 ± 0.738
7.704GlySer: 7.704 ± 3.399
4.622GlyThr: 4.622 ± 1.194
4.622GlyVal: 4.622 ± 3.034
1.541GlyTrp: 1.541 ± 1.011
0.0GlyTyr: 0.0 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
4.622HisAla: 4.622 ± 3.034
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
1.541HisGlu: 1.541 ± 1.103
1.541HisPhe: 1.541 ± 1.103
3.082HisGly: 3.082 ± 0.091
0.0HisHis: 0.0 ± 0.0
1.541HisIle: 1.541 ± 1.011
1.541HisLys: 1.541 ± 1.103
1.541HisLeu: 1.541 ± 1.011
1.541HisMet: 1.541 ± 1.011
0.0HisAsn: 0.0 ± 0.0
4.622HisPro: 4.622 ± 0.92
0.0HisGln: 0.0 ± 0.0
3.082HisArg: 3.082 ± 2.205
0.0HisSer: 0.0 ± 0.0
1.541HisThr: 1.541 ± 1.011
0.0HisVal: 0.0 ± 0.0
0.0HisTrp: 0.0 ± 0.0
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
1.541IleAla: 1.541 ± 1.011
1.541IleCys: 1.541 ± 1.103
0.0IleAsp: 0.0 ± 0.0
3.082IleGlu: 3.082 ± 0.091
4.622IlePhe: 4.622 ± 0.92
6.163IleGly: 6.163 ± 0.182
0.0IleHis: 0.0 ± 0.0
1.541IleIle: 1.541 ± 1.011
3.082IleLys: 3.082 ± 2.023
4.622IleLeu: 4.622 ± 0.92
0.0IleMet: 0.0 ± 0.0
1.541IleAsn: 1.541 ± 1.103
1.541IlePro: 1.541 ± 1.103
3.082IleGln: 3.082 ± 2.205
1.541IleArg: 1.541 ± 1.103
0.0IleSer: 0.0 ± 0.0
0.0IleThr: 0.0 ± 0.0
3.082IleVal: 3.082 ± 0.091
1.541IleTrp: 1.541 ± 1.011
3.082IleTyr: 3.082 ± 2.023
0.0IleXaa: 0.0 ± 0.0
Lys
1.541LysAla: 1.541 ± 1.103
0.0LysCys: 0.0 ± 0.0
3.082LysAsp: 3.082 ± 2.023
3.082LysGlu: 3.082 ± 0.091
1.541LysPhe: 1.541 ± 1.103
3.082LysGly: 3.082 ± 2.205
0.0LysHis: 0.0 ± 0.0
0.0LysIle: 0.0 ± 0.0
4.622LysLys: 4.622 ± 1.194
3.082LysLeu: 3.082 ± 0.091
0.0LysMet: 0.0 ± 0.0
3.082LysAsn: 3.082 ± 2.205
4.622LysPro: 4.622 ± 0.92
3.082LysGln: 3.082 ± 2.023
4.622LysArg: 4.622 ± 3.308
3.082LysSer: 3.082 ± 0.091
3.082LysThr: 3.082 ± 0.091
0.0LysVal: 0.0 ± 0.0
1.541LysTrp: 1.541 ± 1.011
1.541LysTyr: 1.541 ± 1.011
0.0LysXaa: 0.0 ± 0.0
Leu
7.704LeuAla: 7.704 ± 1.285
1.541LeuCys: 1.541 ± 1.011
6.163LeuAsp: 6.163 ± 4.045
3.082LeuGlu: 3.082 ± 0.091
3.082LeuPhe: 3.082 ± 2.205
9.245LeuGly: 9.245 ± 3.954
3.082LeuHis: 3.082 ± 2.023
1.541LeuIle: 1.541 ± 1.103
1.541LeuLys: 1.541 ± 1.103
3.082LeuLeu: 3.082 ± 0.091
0.0LeuMet: 0.0 ± 0.0
1.541LeuAsn: 1.541 ± 1.103
1.541LeuPro: 1.541 ± 1.103
0.0LeuGln: 0.0 ± 0.0
6.163LeuArg: 6.163 ± 1.931
1.541LeuSer: 1.541 ± 1.011
6.163LeuThr: 6.163 ± 2.296
7.704LeuVal: 7.704 ± 1.285
1.541LeuTrp: 1.541 ± 1.011
1.541LeuTyr: 1.541 ± 1.011
0.0LeuXaa: 0.0 ± 0.0
Met
1.541MetAla: 1.541 ± 1.011
0.0MetCys: 0.0 ± 0.0
1.541MetAsp: 1.541 ± 1.103
0.0MetGlu: 0.0 ± 0.0
0.0MetPhe: 0.0 ± 0.0
3.082MetGly: 3.082 ± 0.091
1.541MetHis: 1.541 ± 1.103
1.541MetIle: 1.541 ± 1.103
1.541MetLys: 1.541 ± 1.103
1.541MetLeu: 1.541 ± 1.103
0.0MetMet: 0.0 ± 0.0
1.541MetAsn: 1.541 ± 1.103
3.082MetPro: 3.082 ± 2.023
1.541MetGln: 1.541 ± 1.103
3.082MetArg: 3.082 ± 0.091
1.541MetSer: 1.541 ± 1.011
0.0MetThr: 0.0 ± 0.0
4.622MetVal: 4.622 ± 1.194
0.0MetTrp: 0.0 ± 0.0
1.541MetTyr: 1.541 ± 1.103
0.0MetXaa: 0.0 ± 0.0
Asn
6.163AsnAla: 6.163 ± 4.41
1.541AsnCys: 1.541 ± 1.011
1.541AsnAsp: 1.541 ± 1.011
0.0AsnGlu: 0.0 ± 0.0
1.541AsnPhe: 1.541 ± 1.011
7.704AsnGly: 7.704 ± 5.513
1.541AsnHis: 1.541 ± 1.011
1.541AsnIle: 1.541 ± 1.103
0.0AsnLys: 0.0 ± 0.0
6.163AsnLeu: 6.163 ± 2.296
0.0AsnMet: 0.0 ± 0.0
1.541AsnAsn: 1.541 ± 1.103
0.0AsnPro: 0.0 ± 0.0
1.541AsnGln: 1.541 ± 1.103
4.622AsnArg: 4.622 ± 0.92
3.082AsnSer: 3.082 ± 0.091
4.622AsnThr: 4.622 ± 3.308
1.541AsnVal: 1.541 ± 1.011
1.541AsnTrp: 1.541 ± 1.011
3.082AsnTyr: 3.082 ± 0.091
0.0AsnXaa: 0.0 ± 0.0
Pro
1.541ProAla: 1.541 ± 1.011
0.0ProCys: 0.0 ± 0.0
0.0ProAsp: 0.0 ± 0.0
3.082ProGlu: 3.082 ± 2.023
1.541ProPhe: 1.541 ± 1.103
3.082ProGly: 3.082 ± 2.205
1.541ProHis: 1.541 ± 1.103
1.541ProIle: 1.541 ± 1.103
3.082ProLys: 3.082 ± 0.091
3.082ProLeu: 3.082 ± 2.205
1.541ProMet: 1.541 ± 1.103
1.541ProAsn: 1.541 ± 1.011
3.082ProPro: 3.082 ± 2.023
0.0ProGln: 0.0 ± 0.0
3.082ProArg: 3.082 ± 2.023
3.082ProSer: 3.082 ± 2.023
1.541ProThr: 1.541 ± 1.103
9.245ProVal: 9.245 ± 1.84
3.082ProTrp: 3.082 ± 0.091
1.541ProTyr: 1.541 ± 1.011
0.0ProXaa: 0.0 ± 0.0
Gln
4.622GlnAla: 4.622 ± 0.92
1.541GlnCys: 1.541 ± 1.011
1.541GlnAsp: 1.541 ± 1.103
0.0GlnGlu: 0.0 ± 0.0
0.0GlnPhe: 0.0 ± 0.0
1.541GlnGly: 1.541 ± 1.103
1.541GlnHis: 1.541 ± 1.011
0.0GlnIle: 0.0 ± 0.0
3.082GlnLys: 3.082 ± 2.023
0.0GlnLeu: 0.0 ± 0.0
3.082GlnMet: 3.082 ± 2.023
1.541GlnAsn: 1.541 ± 1.011
1.541GlnPro: 1.541 ± 1.103
0.0GlnGln: 0.0 ± 0.0
1.541GlnArg: 1.541 ± 1.103
1.541GlnSer: 1.541 ± 1.103
1.541GlnThr: 1.541 ± 1.103
1.541GlnVal: 1.541 ± 1.103
0.0GlnTrp: 0.0 ± 0.0
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
6.163ArgAla: 6.163 ± 0.182
0.0ArgCys: 0.0 ± 0.0
7.704ArgAsp: 7.704 ± 0.829
7.704ArgGlu: 7.704 ± 2.943
1.541ArgPhe: 1.541 ± 1.011
7.704ArgGly: 7.704 ± 0.829
3.082ArgHis: 3.082 ± 0.091
4.622ArgIle: 4.622 ± 3.308
7.704ArgLys: 7.704 ± 5.513
4.622ArgLeu: 4.622 ± 0.92
1.541ArgMet: 1.541 ± 0.787
3.082ArgAsn: 3.082 ± 2.205
3.082ArgPro: 3.082 ± 2.023
0.0ArgGln: 0.0 ± 0.0
10.786ArgArg: 10.786 ± 3.49
7.704ArgSer: 7.704 ± 2.943
4.622ArgThr: 4.622 ± 3.308
1.541ArgVal: 1.541 ± 1.103
0.0ArgTrp: 0.0 ± 0.0
4.622ArgTyr: 4.622 ± 0.92
0.0ArgXaa: 0.0 ± 0.0
Ser
0.0SerAla: 0.0 ± 0.0
1.541SerCys: 1.541 ± 1.103
1.541SerAsp: 1.541 ± 1.011
3.082SerGlu: 3.082 ± 0.091
0.0SerPhe: 0.0 ± 0.0
7.704SerGly: 7.704 ± 1.285
0.0SerHis: 0.0 ± 0.0
1.541SerIle: 1.541 ± 1.011
1.541SerLys: 1.541 ± 1.103
6.163SerLeu: 6.163 ± 1.931
1.541SerMet: 1.541 ± 1.011
1.541SerAsn: 1.541 ± 1.103
3.082SerPro: 3.082 ± 0.091
0.0SerGln: 0.0 ± 0.0
10.786SerArg: 10.786 ± 0.738
12.327SerSer: 12.327 ± 6.706
4.622SerThr: 4.622 ± 1.194
6.163SerVal: 6.163 ± 4.41
1.541SerTrp: 1.541 ± 1.011
3.082SerTyr: 3.082 ± 0.091
0.0SerXaa: 0.0 ± 0.0
Thr
1.541ThrAla: 1.541 ± 1.103
0.0ThrCys: 0.0 ± 0.0
1.541ThrAsp: 1.541 ± 1.103
0.0ThrGlu: 0.0 ± 0.0
1.541ThrPhe: 1.541 ± 1.103
1.541ThrGly: 1.541 ± 1.103
3.082ThrHis: 3.082 ± 0.091
3.082ThrIle: 3.082 ± 0.091
1.541ThrLys: 1.541 ± 1.103
4.622ThrLeu: 4.622 ± 1.194
1.541ThrMet: 1.541 ± 0.818
3.082ThrAsn: 3.082 ± 0.091
3.082ThrPro: 3.082 ± 2.205
1.541ThrGln: 1.541 ± 1.011
6.163ThrArg: 6.163 ± 2.296
10.786ThrSer: 10.786 ± 5.604
0.0ThrThr: 0.0 ± 0.0
3.082ThrVal: 3.082 ± 0.091
3.082ThrTrp: 3.082 ± 2.205
4.622ThrTyr: 4.622 ± 1.194
0.0ThrXaa: 0.0 ± 0.0
Val
7.704ValAla: 7.704 ± 1.285
0.0ValCys: 0.0 ± 0.0
3.082ValAsp: 3.082 ± 0.091
4.622ValGlu: 4.622 ± 0.92
4.622ValPhe: 4.622 ± 0.92
3.082ValGly: 3.082 ± 2.023
0.0ValHis: 0.0 ± 0.0
4.622ValIle: 4.622 ± 3.034
3.082ValLys: 3.082 ± 0.091
0.0ValLeu: 0.0 ± 0.0
1.541ValMet: 1.541 ± 1.103
4.622ValAsn: 4.622 ± 1.194
6.163ValPro: 6.163 ± 1.931
1.541ValGln: 1.541 ± 1.011
1.541ValArg: 1.541 ± 1.011
1.541ValSer: 1.541 ± 1.011
7.704ValThr: 7.704 ± 1.285
6.163ValVal: 6.163 ± 1.931
1.541ValTrp: 1.541 ± 1.011
4.622ValTyr: 4.622 ± 1.194
0.0ValXaa: 0.0 ± 0.0
Trp
1.541TrpAla: 1.541 ± 1.011
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
1.541TrpGlu: 1.541 ± 1.011
3.082TrpPhe: 3.082 ± 0.091
1.541TrpGly: 1.541 ± 1.011
1.541TrpHis: 1.541 ± 1.103
0.0TrpIle: 0.0 ± 0.0
3.082TrpLys: 3.082 ± 2.023
3.082TrpLeu: 3.082 ± 2.023
0.0TrpMet: 0.0 ± 0.0
1.541TrpAsn: 1.541 ± 1.103
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
1.541TrpArg: 1.541 ± 1.011
3.082TrpSer: 3.082 ± 2.023
3.082TrpThr: 3.082 ± 2.205
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
9.245TyrAla: 9.245 ± 6.068
0.0TyrCys: 0.0 ± 0.0
1.541TyrAsp: 1.541 ± 1.103
3.082TyrGlu: 3.082 ± 2.023
0.0TyrPhe: 0.0 ± 0.0
3.082TyrGly: 3.082 ± 2.023
0.0TyrHis: 0.0 ± 0.0
0.0TyrIle: 0.0 ± 0.0
3.082TyrLys: 3.082 ± 2.023
1.541TyrLeu: 1.541 ± 1.103
1.541TyrMet: 1.541 ± 1.103
1.541TyrAsn: 1.541 ± 1.011
1.541TyrPro: 1.541 ± 1.103
0.0TyrGln: 0.0 ± 0.0
4.622TyrArg: 4.622 ± 3.308
1.541TyrSer: 1.541 ± 1.103
1.541TyrThr: 1.541 ± 1.011
1.541TyrVal: 1.541 ± 1.103
1.541TyrTrp: 1.541 ± 1.103
3.082TyrTyr: 3.082 ± 2.205
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (650 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski