Fusarium oxysporum f. sp. radicis-cucumerinum

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; Fusarium; Fusarium oxysporum species complex; Fusarium oxysporum

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 16940 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2H3FS04|A0A2H3FS04_FUSOX FAD-binding FR-type domain-containing protein OS=Fusarium oxysporum f. sp. radicis-cucumerinum OX=327505 GN=AU210_016438 PE=4 SV=1
MM1 pKa = 7.8ASTFEE6 pKa = 4.42SPVGIDD12 pKa = 3.42PKK14 pKa = 10.18KK15 pKa = 8.89TSLNSSSPTPEE26 pKa = 3.61MLQYY30 pKa = 10.49DD31 pKa = 4.49APLQDD36 pKa = 3.68MQLDD40 pKa = 3.95DD41 pKa = 4.41AQTVLLSLSGYY52 pKa = 10.22EE53 pKa = 4.07DD54 pKa = 5.35ANGFWYY60 pKa = 10.26CHH62 pKa = 5.81NCPISHH68 pKa = 7.27LDD70 pKa = 3.38EE71 pKa = 4.71AQYY74 pKa = 8.9TAPVDD79 pKa = 3.73GDD81 pKa = 3.77EE82 pKa = 5.64LNTFDD87 pKa = 5.78PLTDD91 pKa = 3.42MLGSKK96 pKa = 10.48LCDD99 pKa = 3.25LDD101 pKa = 4.22SFEE104 pKa = 5.23EE105 pKa = 4.34KK106 pKa = 10.54ASPSDD111 pKa = 4.54GISTLCQFQGNDD123 pKa = 3.3SVLEE127 pKa = 4.05ADD129 pKa = 3.66TPEE132 pKa = 3.98IVIVQQGDD140 pKa = 2.92ACYY143 pKa = 10.37DD144 pKa = 3.13IVRR147 pKa = 11.84IQEE150 pKa = 4.11NKK152 pKa = 9.46SGRR155 pKa = 11.84NLGEE159 pKa = 3.82IADD162 pKa = 3.97IGIDD166 pKa = 3.65PAALHH171 pKa = 5.9YY172 pKa = 10.3SWKK175 pKa = 9.94EE176 pKa = 3.86CNN178 pKa = 3.39

Molecular weight: 19.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2H3H0G6|A0A2H3H0G6_FUSOX Zn(2)-C6 fungal-type domain-containing protein OS=Fusarium oxysporum f. sp. radicis-cucumerinum OX=327505 GN=AU210_009703 PE=4 SV=1
MM1 pKa = 7.86PLTRR5 pKa = 11.84THH7 pKa = 6.63RR8 pKa = 11.84HH9 pKa = 4.04TAPRR13 pKa = 11.84RR14 pKa = 11.84SIFSTRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84APAHH26 pKa = 4.84SHH28 pKa = 5.33RR29 pKa = 11.84HH30 pKa = 4.03TTTTTTTTTKK40 pKa = 9.5PRR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84GMFGGGAGRR53 pKa = 11.84RR54 pKa = 11.84THH56 pKa = 6.46ATTTAPVHH64 pKa = 4.87HH65 pKa = 6.63HH66 pKa = 5.14QRR68 pKa = 11.84RR69 pKa = 11.84PSMKK73 pKa = 10.02DD74 pKa = 2.95KK75 pKa = 11.41VSGALLKK82 pKa = 11.04LKK84 pKa = 10.68GSLTRR89 pKa = 11.84RR90 pKa = 11.84PGVKK94 pKa = 9.89AAGTRR99 pKa = 11.84RR100 pKa = 11.84MRR102 pKa = 11.84GTDD105 pKa = 3.02GRR107 pKa = 11.84GARR110 pKa = 11.84HH111 pKa = 5.87HH112 pKa = 7.23RR113 pKa = 11.84YY114 pKa = 9.44

Molecular weight: 12.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

16567

373

16940

8032873

66

7604

474.2

52.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.294 ± 0.015

1.345 ± 0.009

5.811 ± 0.013

6.159 ± 0.018

3.833 ± 0.013

6.744 ± 0.018

2.4 ± 0.009

5.207 ± 0.015

4.992 ± 0.019

8.934 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.227 ± 0.007

3.804 ± 0.009

5.803 ± 0.023

3.997 ± 0.012

5.837 ± 0.019

8.033 ± 0.019

6.024 ± 0.027

6.117 ± 0.013

1.586 ± 0.007

2.853 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski