Amino acid dipepetide frequency for Fusarium oxysporum f. sp. radicis-cucumerinum

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	8.247AlaAla: 8.247 ± 0.058	1.162AlaCys: 1.162 ± 0.015	4.104AlaAsp: 4.104 ± 0.023	4.965AlaGlu: 4.965 ± 0.036	3.173AlaPhe: 3.173 ± 0.023	5.46AlaGly: 5.46 ± 0.035	1.693AlaHis: 1.693 ± 0.014	4.545AlaIle: 4.545 ± 0.027	4.083AlaLys: 4.083 ± 0.029	7.627AlaLeu: 7.627 ± 0.039	1.98AlaMet: 1.98 ± 0.015	2.953AlaAsn: 2.953 ± 0.021	4.442AlaPro: 4.442 ± 0.037	3.244AlaGln: 3.244 ± 0.023	4.488AlaArg: 4.488 ± 0.025	6.923AlaSer: 6.923 ± 0.035	5.182AlaThr: 5.182 ± 0.035	5.251AlaVal: 5.251 ± 0.033	1.234AlaTrp: 1.234 ± 0.015	2.189AlaTyr: 2.189 ± 0.016	0.0AlaXaa: 0.0 ± 0.0
Cys	0.961CysAla: 0.961 ± 0.012	0.263CysCys: 0.263 ± 0.007	0.764CysAsp: 0.764 ± 0.01	0.671CysGlu: 0.671 ± 0.011	0.593CysPhe: 0.593 ± 0.01	0.979CysGly: 0.979 ± 0.014	0.372CysHis: 0.372 ± 0.008	0.815CysIle: 0.815 ± 0.012	0.602CysLys: 0.602 ± 0.01	1.356CysLeu: 1.356 ± 0.016	0.294CysMet: 0.294 ± 0.006	0.492CysAsn: 0.492 ± 0.007	0.687CysPro: 0.687 ± 0.01	0.53CysGln: 0.53 ± 0.009	0.804CysArg: 0.804 ± 0.01	0.989CysSer: 0.989 ± 0.013	0.76CysThr: 0.76 ± 0.012	0.864CysVal: 0.864 ± 0.012	0.244CysTrp: 0.244 ± 0.005	0.411CysTyr: 0.411 ± 0.008	0.0CysXaa: 0.0 ± 0.0
Asp	4.63AspAla: 4.63 ± 0.024	0.706AspCys: 0.706 ± 0.011	4.181AspAsp: 4.181 ± 0.031	4.47AspGlu: 4.47 ± 0.028	2.298AspPhe: 2.298 ± 0.018	4.055AspGly: 4.055 ± 0.029	1.312AspHis: 1.312 ± 0.016	3.31AspIle: 3.31 ± 0.025	2.714AspLys: 2.714 ± 0.02	5.182AspLeu: 5.182 ± 0.031	1.362AspMet: 1.362 ± 0.014	2.07AspAsn: 2.07 ± 0.015	3.309AspPro: 3.309 ± 0.023	1.976AspGln: 1.976 ± 0.015	2.972AspArg: 2.972 ± 0.023	4.127AspSer: 4.127 ± 0.021	3.103AspThr: 3.103 ± 0.021	3.699AspVal: 3.699 ± 0.024	0.971AspTrp: 0.971 ± 0.012	1.662AspTyr: 1.662 ± 0.014	0.0AspXaa: 0.0 ± 0.0
Glu	5.457GluAla: 5.457 ± 0.034	0.688GluCys: 0.688 ± 0.01	4.06GluAsp: 4.06 ± 0.027	5.029GluGlu: 5.029 ± 0.043	2.02GluPhe: 2.02 ± 0.016	3.612GluGly: 3.612 ± 0.022	1.451GluHis: 1.451 ± 0.015	3.123GluIle: 3.123 ± 0.021	3.68GluLys: 3.68 ± 0.027	5.239GluLeu: 5.239 ± 0.032	1.451GluMet: 1.451 ± 0.013	2.356GluAsn: 2.356 ± 0.017	2.926GluPro: 2.926 ± 0.027	2.426GluGln: 2.426 ± 0.02	3.735GluArg: 3.735 ± 0.03	4.299GluSer: 4.299 ± 0.032	3.78GluThr: 3.78 ± 0.029	3.601GluVal: 3.601 ± 0.024	0.936GluTrp: 0.936 ± 0.011	1.717GluTyr: 1.717 ± 0.016	0.0GluXaa: 0.0 ± 0.0
Phe	3.031PheAla: 3.031 ± 0.023	0.615PheCys: 0.615 ± 0.01	2.356PheAsp: 2.356 ± 0.017	2.224PheGlu: 2.224 ± 0.017	1.707PhePhe: 1.707 ± 0.018	2.904PheGly: 2.904 ± 0.025	0.948PheHis: 0.948 ± 0.011	2.028PheIle: 2.028 ± 0.019	1.671PheLys: 1.671 ± 0.014	3.528PheLeu: 3.528 ± 0.023	0.846PheMet: 0.846 ± 0.011	1.544PheAsn: 1.544 ± 0.013	1.929PhePro: 1.929 ± 0.014	1.466PheGln: 1.466 ± 0.013	1.953PheArg: 1.953 ± 0.018	3.031PheSer: 3.031 ± 0.023	2.261PheThr: 2.261 ± 0.016	2.429PheVal: 2.429 ± 0.019	0.708PheTrp: 0.708 ± 0.012	1.149PheTyr: 1.149 ± 0.014	0.0PheXaa: 0.0 ± 0.0
Gly	5.001GlyAla: 5.001 ± 0.037	0.943GlyCys: 0.943 ± 0.012	3.719GlyAsp: 3.719 ± 0.027	3.491GlyGlu: 3.491 ± 0.022	2.895GlyPhe: 2.895 ± 0.022	5.205GlyGly: 5.205 ± 0.045	1.704GlyHis: 1.704 ± 0.016	3.735GlyIle: 3.735 ± 0.026	3.421GlyLys: 3.421 ± 0.023	6.135GlyLeu: 6.135 ± 0.031	1.545GlyMet: 1.545 ± 0.013	2.662GlyAsn: 2.662 ± 0.022	3.255GlyPro: 3.255 ± 0.026	2.573GlyGln: 2.573 ± 0.02	3.905GlyArg: 3.905 ± 0.028	5.595GlySer: 5.595 ± 0.034	4.016GlyThr: 4.016 ± 0.041	4.215GlyVal: 4.215 ± 0.028	1.22GlyTrp: 1.22 ± 0.013	2.199GlyTyr: 2.199 ± 0.018	0.0GlyXaa: 0.0 ± 0.0
His	1.755HisAla: 1.755 ± 0.018	0.35HisCys: 0.35 ± 0.007	1.418HisAsp: 1.418 ± 0.014	1.416HisGlu: 1.416 ± 0.015	0.956HisPhe: 0.956 ± 0.012	1.751HisGly: 1.751 ± 0.015	0.815HisHis: 0.815 ± 0.013	1.304HisIle: 1.304 ± 0.014	1.007HisLys: 1.007 ± 0.016	2.285HisLeu: 2.285 ± 0.019	0.521HisMet: 0.521 ± 0.009	0.884HisAsn: 0.884 ± 0.009	1.545HisPro: 1.545 ± 0.015	0.999HisGln: 0.999 ± 0.012	1.486HisArg: 1.486 ± 0.014	1.751HisSer: 1.751 ± 0.017	1.215HisThr: 1.215 ± 0.014	1.45HisVal: 1.45 ± 0.014	0.374HisTrp: 0.374 ± 0.006	0.723HisTyr: 0.723 ± 0.01	0.0HisXaa: 0.0 ± 0.0
Ile	4.347IleAla: 4.347 ± 0.026	0.834IleCys: 0.834 ± 0.01	3.087IleAsp: 3.087 ± 0.02	3.123IleGlu: 3.123 ± 0.024	2.112IlePhe: 2.112 ± 0.019	3.398IleGly: 3.398 ± 0.026	1.279IleHis: 1.279 ± 0.015	2.81IleIle: 2.81 ± 0.024	2.408IleLys: 2.408 ± 0.018	4.753IleLeu: 4.753 ± 0.03	1.132IleMet: 1.132 ± 0.012	1.998IleAsn: 1.998 ± 0.015	3.09IlePro: 3.09 ± 0.02	2.035IleGln: 2.035 ± 0.016	2.895IleArg: 2.895 ± 0.021	4.049IleSer: 4.049 ± 0.025	3.066IleThr: 3.066 ± 0.031	3.301IleVal: 3.301 ± 0.024	0.849IleTrp: 0.849 ± 0.012	1.501IleTyr: 1.501 ± 0.015	0.0IleXaa: 0.0 ± 0.0
Lys	4.345LysAla: 4.345 ± 0.03	0.597LysCys: 0.597 ± 0.011	3.098LysAsp: 3.098 ± 0.028	3.375LysGlu: 3.375 ± 0.027	1.556LysPhe: 1.556 ± 0.014	3.086LysGly: 3.086 ± 0.023	1.219LysHis: 1.219 ± 0.014	2.384LysIle: 2.384 ± 0.018	3.273LysLys: 3.273 ± 0.032	4.269LysLeu: 4.269 ± 0.027	1.039LysMet: 1.039 ± 0.01	1.89LysAsn: 1.89 ± 0.018	2.854LysPro: 2.854 ± 0.024	1.876LysGln: 1.876 ± 0.017	3.284LysArg: 3.284 ± 0.023	3.58LysSer: 3.58 ± 0.026	3.072LysThr: 3.072 ± 0.022	2.929LysVal: 2.929 ± 0.022	0.762LysTrp: 0.762 ± 0.01	1.432LysTyr: 1.432 ± 0.014	0.0LysXaa: 0.0 ± 0.0
Leu	7.744LeuAla: 7.744 ± 0.038	1.298LeuCys: 1.298 ± 0.015	5.302LeuAsp: 5.302 ± 0.03	5.585LeuGlu: 5.585 ± 0.031	3.41LeuPhe: 3.41 ± 0.026	6.018LeuGly: 6.018 ± 0.034	2.215LeuHis: 2.215 ± 0.021	4.245LeuIle: 4.245 ± 0.029	4.306LeuLys: 4.306 ± 0.026	8.219LeuLeu: 8.219 ± 0.047	1.885LeuMet: 1.885 ± 0.017	3.256LeuAsn: 3.256 ± 0.023	5.282LeuPro: 5.282 ± 0.028	3.798LeuGln: 3.798 ± 0.023	5.495LeuArg: 5.495 ± 0.034	7.207LeuSer: 7.207 ± 0.03	4.886LeuThr: 4.886 ± 0.026	5.484LeuVal: 5.484 ± 0.03	1.297LeuTrp: 1.297 ± 0.015	2.407LeuTyr: 2.407 ± 0.019	0.0LeuXaa: 0.0 ± 0.0
Met	2.289MetAla: 2.289 ± 0.018	0.26MetCys: 0.26 ± 0.005	1.263MetAsp: 1.263 ± 0.013	1.28MetGlu: 1.28 ± 0.012	0.795MetPhe: 0.795 ± 0.01	1.496MetGly: 1.496 ± 0.015	0.498MetHis: 0.498 ± 0.008	1.099MetIle: 1.099 ± 0.012	1.071MetLys: 1.071 ± 0.012	1.881MetLeu: 1.881 ± 0.015	0.622MetMet: 0.622 ± 0.01	0.839MetAsn: 0.839 ± 0.012	1.296MetPro: 1.296 ± 0.015	0.855MetGln: 0.855 ± 0.01	1.218MetArg: 1.218 ± 0.013	1.989MetSer: 1.989 ± 0.014	1.37MetThr: 1.37 ± 0.011	1.338MetVal: 1.338 ± 0.013	0.274MetTrp: 0.274 ± 0.006	0.537MetTyr: 0.537 ± 0.008	0.0MetXaa: 0.0 ± 0.0
Asn	3.071AsnAla: 3.071 ± 0.019	0.516AsnCys: 0.516 ± 0.01	2.123AsnAsp: 2.123 ± 0.018	2.139AsnGlu: 2.139 ± 0.015	1.439AsnPhe: 1.439 ± 0.014	3.001AsnGly: 3.001 ± 0.024	0.884AsnHis: 0.884 ± 0.011	2.172AsnIle: 2.172 ± 0.017	1.781AsnLys: 1.781 ± 0.014	3.391AsnLeu: 3.391 ± 0.022	0.929AsnMet: 0.929 ± 0.013	1.623AsnAsn: 1.623 ± 0.017	2.404AsnPro: 2.404 ± 0.019	1.404AsnGln: 1.404 ± 0.013	1.957AsnArg: 1.957 ± 0.015	2.848AsnSer: 2.848 ± 0.021	2.298AsnThr: 2.298 ± 0.019	2.315AsnVal: 2.315 ± 0.019	0.643AsnTrp: 0.643 ± 0.011	1.1AsnTyr: 1.1 ± 0.012	0.0AsnXaa: 0.0 ± 0.0
Pro	4.712ProAla: 4.712 ± 0.034	0.582ProCys: 0.582 ± 0.01	3.311ProAsp: 3.311 ± 0.022	3.955ProGlu: 3.955 ± 0.029	2.096ProPhe: 2.096 ± 0.019	3.906ProGly: 3.906 ± 0.045	1.249ProHis: 1.249 ± 0.016	2.571ProIle: 2.571 ± 0.019	2.756ProLys: 2.756 ± 0.023	4.519ProLeu: 4.519 ± 0.024	1.1ProMet: 1.1 ± 0.013	2.197ProAsn: 2.197 ± 0.018	4.383ProPro: 4.383 ± 0.051	2.383ProGln: 2.383 ± 0.026	3.192ProArg: 3.192 ± 0.022	5.487ProSer: 5.487 ± 0.034	3.771ProThr: 3.771 ± 0.029	3.516ProVal: 3.516 ± 0.029	0.819ProTrp: 0.819 ± 0.011	1.523ProTyr: 1.523 ± 0.016	0.0ProXaa: 0.0 ± 0.0
Gln	3.432GlnAla: 3.432 ± 0.023	0.484GlnCys: 0.484 ± 0.008	2.284GlnAsp: 2.284 ± 0.016	2.442GlnGlu: 2.442 ± 0.022	1.303GlnPhe: 1.303 ± 0.013	2.538GlnGly: 2.538 ± 0.024	1.062GlnHis: 1.062 ± 0.013	1.924GlnIle: 1.924 ± 0.016	1.959GlnLys: 1.959 ± 0.017	3.461GlnLeu: 3.461 ± 0.024	0.87GlnMet: 0.87 ± 0.012	1.581GlnAsn: 1.581 ± 0.014	2.477GlnPro: 2.477 ± 0.025	2.218GlnGln: 2.218 ± 0.028	2.533GlnArg: 2.533 ± 0.024	3.023GlnSer: 3.023 ± 0.023	2.313GlnThr: 2.313 ± 0.02	2.277GlnVal: 2.277 ± 0.02	0.621GlnTrp: 0.621 ± 0.009	1.168GlnTyr: 1.168 ± 0.014	0.0GlnXaa: 0.0 ± 0.0
Arg	4.282ArgAla: 4.282 ± 0.025	0.768ArgCys: 0.768 ± 0.011	3.386ArgAsp: 3.386 ± 0.023	3.563ArgGlu: 3.563 ± 0.026	2.148ArgPhe: 2.148 ± 0.018	3.458ArgGly: 3.458 ± 0.027	1.535ArgHis: 1.535 ± 0.015	2.907ArgIle: 2.907 ± 0.024	3.286ArgLys: 3.286 ± 0.024	5.364ArgLeu: 5.364 ± 0.032	1.269ArgMet: 1.269 ± 0.013	2.278ArgAsn: 2.278 ± 0.017	3.306ArgPro: 3.306 ± 0.023	2.556ArgGln: 2.556 ± 0.023	4.724ArgArg: 4.724 ± 0.036	4.426ArgSer: 4.426 ± 0.03	3.125ArgThr: 3.125 ± 0.023	3.3ArgVal: 3.3 ± 0.021	0.973ArgTrp: 0.973 ± 0.012	1.715ArgTyr: 1.715 ± 0.017	0.0ArgXaa: 0.0 ± 0.0
Ser	6.126SerAla: 6.126 ± 0.039	0.991SerCys: 0.991 ± 0.014	4.342SerAsp: 4.342 ± 0.023	4.188SerGlu: 4.188 ± 0.028	3.104SerPhe: 3.104 ± 0.022	5.37SerGly: 5.37 ± 0.038	1.928SerHis: 1.928 ± 0.018	4.198SerIle: 4.198 ± 0.024	3.834SerLys: 3.834 ± 0.026	7.169SerLeu: 7.169 ± 0.036	1.771SerMet: 1.771 ± 0.018	3.021SerAsn: 3.021 ± 0.021	5.057SerPro: 5.057 ± 0.039	3.309SerGln: 3.309 ± 0.026	4.741SerArg: 4.741 ± 0.03	7.957SerSer: 7.957 ± 0.053	5.314SerThr: 5.314 ± 0.035	4.517SerVal: 4.517 ± 0.023	1.264SerTrp: 1.264 ± 0.012	2.133SerTyr: 2.133 ± 0.02	0.0SerXaa: 0.0 ± 0.0
Thr	5.058ThrAla: 5.058 ± 0.03	0.839ThrCys: 0.839 ± 0.013	2.926ThrAsp: 2.926 ± 0.021	3.318ThrGlu: 3.318 ± 0.027	2.318ThrPhe: 2.318 ± 0.019	4.165ThrGly: 4.165 ± 0.028	1.255ThrHis: 1.255 ± 0.012	3.377ThrIle: 3.377 ± 0.039	2.886ThrLys: 2.886 ± 0.023	5.234ThrLeu: 5.234 ± 0.028	1.232ThrMet: 1.232 ± 0.014	2.21ThrAsn: 2.21 ± 0.018	4.073ThrPro: 4.073 ± 0.037	2.173ThrGln: 2.173 ± 0.02	3.131ThrArg: 3.131 ± 0.024	5.206ThrSer: 5.206 ± 0.04	4.374ThrThr: 4.374 ± 0.064	3.799ThrVal: 3.799 ± 0.046	0.954ThrTrp: 0.954 ± 0.011	1.719ThrTyr: 1.719 ± 0.017	0.0ThrXaa: 0.0 ± 0.0
Val	5.106ValAla: 5.106 ± 0.031	0.881ValCys: 0.881 ± 0.012	3.706ValAsp: 3.706 ± 0.024	3.847ValGlu: 3.847 ± 0.024	2.572ValPhe: 2.572 ± 0.023	3.879ValGly: 3.879 ± 0.029	1.383ValHis: 1.383 ± 0.016	3.174ValIle: 3.174 ± 0.025	3.056ValLys: 3.056 ± 0.024	5.572ValLeu: 5.572 ± 0.035	1.36ValMet: 1.36 ± 0.011	2.28ValAsn: 2.28 ± 0.018	3.527ValPro: 3.527 ± 0.024	2.376ValGln: 2.376 ± 0.019	3.223ValArg: 3.223 ± 0.021	4.633ValSer: 4.633 ± 0.024	3.679ValThr: 3.679 ± 0.041	4.233ValVal: 4.233 ± 0.03	0.897ValTrp: 0.897 ± 0.013	1.786ValTyr: 1.786 ± 0.015	0.0ValXaa: 0.0 ± 0.0
Trp	1.224TrpAla: 1.224 ± 0.013	0.22TrpCys: 0.22 ± 0.005	0.949TrpAsp: 0.949 ± 0.012	0.895TrpGlu: 0.895 ± 0.012	0.612TrpPhe: 0.612 ± 0.009	1.016TrpGly: 1.016 ± 0.012	0.397TrpHis: 0.397 ± 0.007	0.883TrpIle: 0.883 ± 0.011	0.904TrpLys: 0.904 ± 0.01	1.478TrpLeu: 1.478 ± 0.016	0.402TrpMet: 0.402 ± 0.006	0.71TrpAsn: 0.71 ± 0.01	0.683TrpPro: 0.683 ± 0.011	0.622TrpGln: 0.622 ± 0.01	0.961TrpArg: 0.961 ± 0.012	1.153TrpSer: 1.153 ± 0.012	1.008TrpThr: 1.008 ± 0.013	0.961TrpVal: 0.961 ± 0.011	0.306TrpTrp: 0.306 ± 0.006	0.477TrpTyr: 0.477 ± 0.008	0.0TrpXaa: 0.0 ± 0.0
Tyr	2.124TyrAla: 2.124 ± 0.019	0.454TyrCys: 0.454 ± 0.008	1.726TyrAsp: 1.726 ± 0.015	1.612TyrGlu: 1.612 ± 0.014	1.221TyrPhe: 1.221 ± 0.015	2.141TyrGly: 2.141 ± 0.02	0.807TyrHis: 0.807 ± 0.011	1.463TyrIle: 1.463 ± 0.015	1.225TyrLys: 1.225 ± 0.013	2.676TyrLeu: 2.676 ± 0.021	0.661TyrMet: 0.661 ± 0.01	1.195TyrAsn: 1.195 ± 0.012	1.501TyrPro: 1.501 ± 0.017	1.151TyrGln: 1.151 ± 0.012	1.675TyrArg: 1.675 ± 0.014	2.06TyrSer: 2.06 ± 0.017	1.652TyrThr: 1.652 ± 0.017	1.691TyrVal: 1.691 ± 0.016	0.514TyrTrp: 0.514 ± 0.009	0.977TyrTyr: 0.977 ± 0.012	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.0XaaXaa: 0.0 ± 0.0

Statistics based on 16940 proteins (8032873 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

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