Ferrimonas lipolytica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Ferrimonadaceae; Ferrimonas

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3539 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6H1UBZ8|A0A6H1UBZ8_9GAMM Adenine phosphoribosyltransferase OS=Ferrimonas lipolytica OX=2724191 GN=apt PE=3 SV=1
MM1 pKa = 7.19KK2 pKa = 10.31RR3 pKa = 11.84SLVTLGVIVALAGCDD18 pKa = 3.48SDD20 pKa = 3.54NHH22 pKa = 5.83NVVTSDD28 pKa = 3.34FTLQLLHH35 pKa = 6.33VADD38 pKa = 4.35MDD40 pKa = 4.1GSNATVLEE48 pKa = 4.29NASNMSALVEE58 pKa = 4.42GFTSQHH64 pKa = 5.92ANNTLFLSSGDD75 pKa = 3.48NYY77 pKa = 10.52IPGSRR82 pKa = 11.84YY83 pKa = 9.73DD84 pKa = 3.45AAADD88 pKa = 3.51EE89 pKa = 4.86SMVNVDD95 pKa = 4.07TIGVPGVARR104 pKa = 11.84ADD106 pKa = 3.25IAMLNAMGLQASAVGNHH123 pKa = 6.6DD124 pKa = 4.28LDD126 pKa = 4.5GGSAEE131 pKa = 4.2FASIINTQSASSCDD145 pKa = 3.72ANISCSADD153 pKa = 3.33YY154 pKa = 10.73IGAQFPYY161 pKa = 10.35LSANMDD167 pKa = 3.74FATDD171 pKa = 3.43EE172 pKa = 4.06NTIALVATAGQSAANLANKK191 pKa = 8.22LTASTVITVDD201 pKa = 3.43GEE203 pKa = 4.4HH204 pKa = 6.86IGIVGITTPTNDD216 pKa = 5.62DD217 pKa = 3.3ITTVDD222 pKa = 4.88DD223 pKa = 3.67IAVYY227 pKa = 9.76PLNDD231 pKa = 5.57DD232 pKa = 3.46IGEE235 pKa = 4.14LAAIVQSEE243 pKa = 4.57VNALTATGINKK254 pKa = 9.75IIALAHH260 pKa = 5.3MQSITYY266 pKa = 8.2EE267 pKa = 4.0KK268 pKa = 10.54QLAEE272 pKa = 4.39LLRR275 pKa = 11.84DD276 pKa = 3.15VDD278 pKa = 4.21IIVAGGSNTLLANDD292 pKa = 5.48DD293 pKa = 3.68DD294 pKa = 4.84RR295 pKa = 11.84LWAGDD300 pKa = 3.76TAAGSYY306 pKa = 10.01PIIKK310 pKa = 9.8QDD312 pKa = 3.48ADD314 pKa = 3.8GNDD317 pKa = 3.36VAIVNVDD324 pKa = 2.99ADD326 pKa = 3.83YY327 pKa = 10.97KK328 pKa = 9.88YY329 pKa = 10.82LGRR332 pKa = 11.84LVVDD336 pKa = 4.78FDD338 pKa = 4.92SDD340 pKa = 3.7GKK342 pKa = 11.26LLVDD346 pKa = 5.21SISAADD352 pKa = 3.96SGPVITDD359 pKa = 3.23GQMVDD364 pKa = 3.3ATEE367 pKa = 4.42GATPNSDD374 pKa = 3.35VIALVDD380 pKa = 4.33SINEE384 pKa = 3.74VLIEE388 pKa = 4.15SEE390 pKa = 4.69SNVVGHH396 pKa = 6.53TDD398 pKa = 2.87VFLNGTRR405 pKa = 11.84SYY407 pKa = 11.63VRR409 pKa = 11.84TEE411 pKa = 3.66EE412 pKa = 4.28TNLGNLSADD421 pKa = 3.27ANLWYY426 pKa = 10.34AQLHH430 pKa = 6.14DD431 pKa = 4.15ASVVISLKK439 pKa = 10.61NGGGIRR445 pKa = 11.84ADD447 pKa = 2.97IGYY450 pKa = 9.33SAFPAGSTDD459 pKa = 3.85PDD461 pKa = 3.99DD462 pKa = 3.72LTYY465 pKa = 10.65YY466 pKa = 10.22PPAAYY471 pKa = 8.25PAAQKK476 pKa = 11.19AEE478 pKa = 4.05GDD480 pKa = 3.08ISQYY484 pKa = 11.27DD485 pKa = 3.79VQTALAFNNGLSVFDD500 pKa = 3.94LTGEE504 pKa = 4.1QLWDD508 pKa = 3.3ILEE511 pKa = 4.38SGVAGVEE518 pKa = 4.14NISGGFHH525 pKa = 6.31HH526 pKa = 7.24VAGLCFSYY534 pKa = 10.9DD535 pKa = 3.18GTKK538 pKa = 9.21TARR541 pKa = 11.84QSDD544 pKa = 4.49PEE546 pKa = 4.4SGAVTVAGEE555 pKa = 4.21RR556 pKa = 11.84VQQIIVDD563 pKa = 3.8TDD565 pKa = 3.18SDD567 pKa = 4.54GNCDD571 pKa = 3.63KK572 pKa = 11.4NSDD575 pKa = 4.01DD576 pKa = 3.69MVMAGGTLQLPDD588 pKa = 3.09ATYY591 pKa = 8.74RR592 pKa = 11.84TVSLDD597 pKa = 3.47YY598 pKa = 10.34LASGAPYY605 pKa = 9.6PCAGDD610 pKa = 4.64DD611 pKa = 5.0CDD613 pKa = 4.58NQVQLGDD620 pKa = 4.02EE621 pKa = 4.36MTTDD625 pKa = 3.76PQASNFAATGSEE637 pKa = 3.54QDD639 pKa = 3.49ALAEE643 pKa = 3.98FLQAFYY649 pKa = 11.22ADD651 pKa = 4.16SDD653 pKa = 4.01SAYY656 pKa = 10.61NSSDD660 pKa = 3.46SVDD663 pKa = 3.36GGEE666 pKa = 3.78ADD668 pKa = 3.46ARR670 pKa = 11.84VIRR673 pKa = 11.84LDD675 pKa = 3.3KK676 pKa = 11.25

Molecular weight: 70.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6H1UGT7|A0A6H1UGT7_9GAMM GGDEF domain-containing protein OS=Ferrimonas lipolytica OX=2724191 GN=HER31_16195 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 9.37RR14 pKa = 11.84NHH16 pKa = 5.37GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.39GRR39 pKa = 11.84ARR41 pKa = 11.84LSAA44 pKa = 3.91

Molecular weight: 5.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3539

0

3539

1156617

28

4188

326.8

36.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.778 ± 0.049

1.117 ± 0.016

5.637 ± 0.044

5.746 ± 0.035

3.719 ± 0.029

7.234 ± 0.04

2.32 ± 0.023

5.62 ± 0.032

4.224 ± 0.036

10.827 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.645 ± 0.021

3.965 ± 0.029

4.142 ± 0.027

5.464 ± 0.056

4.915 ± 0.036

6.252 ± 0.038

5.254 ± 0.042

7.022 ± 0.031

1.309 ± 0.019

2.809 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski