Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_374

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.717AlaAla: 4.717 ± 2.913
1.179AlaCys: 1.179 ± 0.369
4.717AlaAsp: 4.717 ± 1.925
2.358AlaGlu: 2.358 ± 0.928
1.179AlaPhe: 1.179 ± 0.731
3.538AlaGly: 3.538 ± 2.148
1.769AlaHis: 1.769 ± 0.593
2.948AlaIle: 2.948 ± 0.507
1.769AlaLys: 1.769 ± 1.214
4.717AlaLeu: 4.717 ± 1.902
1.179AlaMet: 1.179 ± 0.837
3.538AlaAsn: 3.538 ± 0.389
3.538AlaPro: 3.538 ± 1.612
5.896AlaGln: 5.896 ± 4.973
4.127AlaArg: 4.127 ± 3.012
3.538AlaSer: 3.538 ± 0.852
2.948AlaThr: 2.948 ± 1.226
3.538AlaVal: 3.538 ± 0.852
0.59AlaTrp: 0.59 ± 0.848
4.717AlaTyr: 4.717 ± 1.02
0.0AlaXaa: 0.0 ± 0.0
Cys
0.59CysAla: 0.59 ± 0.434
0.0CysCys: 0.0 ± 0.0
0.59CysAsp: 0.59 ± 0.365
0.59CysGlu: 0.59 ± 0.365
0.59CysPhe: 0.59 ± 0.434
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.59CysLys: 0.59 ± 0.434
1.179CysLeu: 1.179 ± 0.369
0.0CysMet: 0.0 ± 0.0
1.769CysAsn: 1.769 ± 0.593
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.59CysArg: 0.59 ± 0.434
0.59CysSer: 0.59 ± 0.365
0.59CysThr: 0.59 ± 0.365
1.179CysVal: 1.179 ± 0.868
0.0CysTrp: 0.0 ± 0.0
0.59CysTyr: 0.59 ± 0.365
0.0CysXaa: 0.0 ± 0.0
Asp
2.948AspAla: 2.948 ± 1.221
0.0AspCys: 0.0 ± 0.0
1.769AspAsp: 1.769 ± 0.593
1.179AspGlu: 1.179 ± 0.673
3.538AspPhe: 3.538 ± 1.274
4.717AspGly: 4.717 ± 1.478
0.59AspHis: 0.59 ± 0.365
4.127AspIle: 4.127 ± 1.716
4.717AspLys: 4.717 ± 0.735
7.075AspLeu: 7.075 ± 1.883
0.59AspMet: 0.59 ± 0.365
2.358AspAsn: 2.358 ± 0.234
2.948AspPro: 2.948 ± 0.507
3.538AspGln: 3.538 ± 1.003
0.0AspArg: 0.0 ± 0.0
3.538AspSer: 3.538 ± 1.186
4.127AspThr: 4.127 ± 0.791
2.948AspVal: 2.948 ± 0.507
0.59AspTrp: 0.59 ± 0.365
3.538AspTyr: 3.538 ± 0.852
0.0AspXaa: 0.0 ± 0.0
Glu
2.948GluAla: 2.948 ± 1.221
0.59GluCys: 0.59 ± 0.434
2.948GluAsp: 2.948 ± 1.18
1.179GluGlu: 1.179 ± 0.481
1.179GluPhe: 1.179 ± 0.837
4.127GluGly: 4.127 ± 0.881
1.769GluHis: 1.769 ± 0.593
2.358GluIle: 2.358 ± 0.963
5.307GluLys: 5.307 ± 2.641
4.127GluLeu: 4.127 ± 1.259
1.769GluMet: 1.769 ± 1.082
2.948GluAsn: 2.948 ± 0.368
0.59GluPro: 0.59 ± 0.365
2.948GluGln: 2.948 ± 0.718
2.948GluArg: 2.948 ± 1.258
3.538GluSer: 3.538 ± 1.548
5.307GluThr: 5.307 ± 0.7
1.769GluVal: 1.769 ± 0.593
0.59GluTrp: 0.59 ± 0.434
8.255GluTyr: 8.255 ± 1.955
0.0GluXaa: 0.0 ± 0.0
Phe
2.358PheAla: 2.358 ± 1.462
0.0PheCys: 0.0 ± 0.0
2.358PheAsp: 2.358 ± 1.462
1.769PheGlu: 1.769 ± 0.593
0.59PhePhe: 0.59 ± 0.365
2.358PheGly: 2.358 ± 0.86
1.179PheHis: 1.179 ± 0.731
2.358PheIle: 2.358 ± 0.913
3.538PheLys: 3.538 ± 1.108
0.59PheLeu: 0.59 ± 0.365
0.0PheMet: 0.0 ± 0.0
1.769PheAsn: 1.769 ± 0.975
4.717PhePro: 4.717 ± 1.769
1.179PheGln: 1.179 ± 0.837
2.358PheArg: 2.358 ± 0.968
0.59PheSer: 0.59 ± 0.365
2.948PheThr: 2.948 ± 0.918
2.358PheVal: 2.358 ± 0.234
0.59PheTrp: 0.59 ± 0.365
2.948PheTyr: 2.948 ± 1.057
0.0PheXaa: 0.0 ± 0.0
Gly
1.179GlyAla: 1.179 ± 0.369
0.0GlyCys: 0.0 ± 0.0
1.769GlyAsp: 1.769 ± 1.096
3.538GlyGlu: 3.538 ± 1.612
1.769GlyPhe: 1.769 ± 0.593
2.358GlyGly: 2.358 ± 0.913
0.0GlyHis: 0.0 ± 0.0
3.538GlyIle: 3.538 ± 1.257
2.948GlyLys: 2.948 ± 1.221
7.075GlyLeu: 7.075 ± 1.382
1.179GlyMet: 1.179 ± 1.23
2.948GlyAsn: 2.948 ± 1.006
1.769GlyPro: 1.769 ± 0.593
4.127GlyGln: 4.127 ± 0.881
2.948GlyArg: 2.948 ± 0.368
4.717GlySer: 4.717 ± 1.5
3.538GlyThr: 3.538 ± 1.868
1.769GlyVal: 1.769 ± 0.347
0.59GlyTrp: 0.59 ± 0.365
3.538GlyTyr: 3.538 ± 1.612
0.0GlyXaa: 0.0 ± 0.0
His
0.59HisAla: 0.59 ± 0.365
1.179HisCys: 1.179 ± 0.369
1.769HisAsp: 1.769 ± 1.096
0.0HisGlu: 0.0 ± 0.0
0.59HisPhe: 0.59 ± 0.365
1.769HisGly: 1.769 ± 1.096
0.0HisHis: 0.0 ± 0.0
1.179HisIle: 1.179 ± 0.369
0.59HisLys: 0.59 ± 0.365
1.769HisLeu: 1.769 ± 0.719
0.0HisMet: 0.0 ± 0.354
1.179HisAsn: 1.179 ± 0.481
1.179HisPro: 1.179 ± 0.369
0.59HisGln: 0.59 ± 0.434
0.59HisArg: 0.59 ± 0.434
0.59HisSer: 0.59 ± 0.434
1.179HisThr: 1.179 ± 0.731
0.59HisVal: 0.59 ± 0.434
0.59HisTrp: 0.59 ± 0.434
1.179HisTyr: 1.179 ± 0.673
0.0HisXaa: 0.0 ± 0.0
Ile
1.769IleAla: 1.769 ± 0.719
0.0IleCys: 0.0 ± 0.0
8.255IleAsp: 8.255 ± 1.76
2.948IleGlu: 2.948 ± 1.014
1.179IlePhe: 1.179 ± 0.868
5.307IleGly: 5.307 ± 2.585
0.59IleHis: 0.59 ± 0.434
4.717IleIle: 4.717 ± 2.257
2.948IleLys: 2.948 ± 0.368
2.948IleLeu: 2.948 ± 1.014
1.769IleMet: 1.769 ± 1.097
4.717IleAsn: 4.717 ± 0.901
2.358IlePro: 2.358 ± 1.211
2.948IleGln: 2.948 ± 1.536
4.127IleArg: 4.127 ± 2.41
4.717IleSer: 4.717 ± 1.902
6.486IleThr: 6.486 ± 2.089
1.179IleVal: 1.179 ± 1.23
0.0IleTrp: 0.0 ± 0.0
4.717IleTyr: 4.717 ± 0.992
0.0IleXaa: 0.0 ± 0.0
Lys
6.486LysAla: 6.486 ± 3.562
0.0LysCys: 0.0 ± 0.0
4.127LysAsp: 4.127 ± 0.65
4.717LysGlu: 4.717 ± 2.726
1.769LysPhe: 1.769 ± 1.096
4.127LysGly: 4.127 ± 2.37
0.0LysHis: 0.0 ± 0.0
4.127LysIle: 4.127 ± 0.659
3.538LysLys: 3.538 ± 1.257
4.717LysLeu: 4.717 ± 0.735
0.59LysMet: 0.59 ± 0.726
2.948LysAsn: 2.948 ± 0.368
0.0LysPro: 0.0 ± 0.0
2.948LysGln: 2.948 ± 1.518
2.358LysArg: 2.358 ± 0.739
4.127LysSer: 4.127 ± 1.194
3.538LysThr: 3.538 ± 1.316
3.538LysVal: 3.538 ± 1.186
0.0LysTrp: 0.0 ± 0.0
3.538LysTyr: 3.538 ± 1.437
0.0LysXaa: 0.0 ± 0.0
Leu
4.127LeuAla: 4.127 ± 1.515
0.59LeuCys: 0.59 ± 0.434
2.948LeuAsp: 2.948 ± 1.536
3.538LeuGlu: 3.538 ± 1.78
2.358LeuPhe: 2.358 ± 0.739
2.358LeuGly: 2.358 ± 0.913
1.769LeuHis: 1.769 ± 0.593
4.717LeuIle: 4.717 ± 0.992
4.717LeuLys: 4.717 ± 0.612
6.486LeuLeu: 6.486 ± 2.113
1.179LeuMet: 1.179 ± 1.065
7.075LeuAsn: 7.075 ± 3.096
5.896LeuPro: 5.896 ± 1.52
4.717LeuGln: 4.717 ± 0.689
5.307LeuArg: 5.307 ± 1.836
6.486LeuSer: 6.486 ± 0.792
8.255LeuThr: 8.255 ± 1.318
1.769LeuVal: 1.769 ± 0.975
1.179LeuTrp: 1.179 ± 0.369
2.358LeuTyr: 2.358 ± 0.234
0.0LeuXaa: 0.0 ± 0.0
Met
2.358MetAla: 2.358 ± 1.342
0.0MetCys: 0.0 ± 0.0
0.59MetAsp: 0.59 ± 0.365
0.59MetGlu: 0.59 ± 0.434
0.0MetPhe: 0.0 ± 0.0
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
0.59MetIle: 0.59 ± 0.434
3.538MetLys: 3.538 ± 1.186
1.769MetLeu: 1.769 ± 0.347
0.0MetMet: 0.0 ± 0.0
4.127MetAsn: 4.127 ± 1.259
1.179MetPro: 1.179 ± 0.731
1.179MetGln: 1.179 ± 0.731
1.179MetArg: 1.179 ± 0.369
2.948MetSer: 2.948 ± 1.18
2.358MetThr: 2.358 ± 2.48
0.59MetVal: 0.59 ± 0.365
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
5.307AsnAla: 5.307 ± 2.663
0.0AsnCys: 0.0 ± 0.0
2.358AsnAsp: 2.358 ± 1.211
5.307AsnGlu: 5.307 ± 0.752
2.948AsnPhe: 2.948 ± 0.918
2.948AsnGly: 2.948 ± 1.258
1.179AsnHis: 1.179 ± 0.731
2.948AsnIle: 2.948 ± 1.536
1.769AsnLys: 1.769 ± 0.951
4.127AsnLeu: 4.127 ± 2.324
2.948AsnMet: 2.948 ± 0.918
5.896AsnAsn: 5.896 ± 1.438
5.307AsnPro: 5.307 ± 1.448
6.486AsnGln: 6.486 ± 1.33
5.307AsnArg: 5.307 ± 2.348
2.358AsnSer: 2.358 ± 1.643
7.665AsnThr: 7.665 ± 0.519
6.486AsnVal: 6.486 ± 1.589
0.59AsnTrp: 0.59 ± 0.434
1.179AsnTyr: 1.179 ± 0.868
0.0AsnXaa: 0.0 ± 0.0
Pro
2.948ProAla: 2.948 ± 0.507
0.0ProCys: 0.0 ± 0.0
0.59ProAsp: 0.59 ± 0.365
1.769ProGlu: 1.769 ± 0.593
1.179ProPhe: 1.179 ± 0.731
1.179ProGly: 1.179 ± 0.731
1.179ProHis: 1.179 ± 0.868
4.717ProIle: 4.717 ± 1.666
1.769ProLys: 1.769 ± 0.975
2.948ProLeu: 2.948 ± 0.507
2.358ProMet: 2.358 ± 0.913
4.717ProAsn: 4.717 ± 1.928
0.59ProPro: 0.59 ± 0.434
2.948ProGln: 2.948 ± 1.536
2.948ProArg: 2.948 ± 1.014
2.358ProSer: 2.358 ± 1.211
4.717ProThr: 4.717 ± 1.769
4.127ProVal: 4.127 ± 1.495
1.179ProTrp: 1.179 ± 0.731
2.358ProTyr: 2.358 ± 0.739
0.0ProXaa: 0.0 ± 0.0
Gln
4.127GlnAla: 4.127 ± 3.475
1.769GlnCys: 1.769 ± 0.951
3.538GlnAsp: 3.538 ± 1.257
5.307GlnGlu: 5.307 ± 1.885
1.179GlnPhe: 1.179 ± 0.913
1.179GlnGly: 1.179 ± 1.082
0.0GlnHis: 0.0 ± 0.0
3.538GlnIle: 3.538 ± 0.389
3.538GlnLys: 3.538 ± 1.257
6.486GlnLeu: 6.486 ± 0.888
2.948GlnMet: 2.948 ± 1.017
2.358GlnAsn: 2.358 ± 0.829
1.769GlnPro: 1.769 ± 1.096
5.307GlnGln: 5.307 ± 1.493
4.717GlnArg: 4.717 ± 1.346
3.538GlnSer: 3.538 ± 1.241
3.538GlnThr: 3.538 ± 0.389
2.948GlnVal: 2.948 ± 1.014
0.59GlnTrp: 0.59 ± 0.615
1.769GlnTyr: 1.769 ± 0.719
0.0GlnXaa: 0.0 ± 0.0
Arg
2.358ArgAla: 2.358 ± 0.234
0.0ArgCys: 0.0 ± 0.0
1.769ArgAsp: 1.769 ± 1.303
2.948ArgGlu: 2.948 ± 1.006
0.0ArgPhe: 0.0 ± 0.0
4.717ArgGly: 4.717 ± 2.044
1.179ArgHis: 1.179 ± 0.868
4.717ArgIle: 4.717 ± 1.856
4.127ArgLys: 4.127 ± 1.548
1.769ArgLeu: 1.769 ± 1.214
0.59ArgMet: 0.59 ± 0.615
4.717ArgAsn: 4.717 ± 2.227
1.769ArgPro: 1.769 ± 1.303
3.538ArgGln: 3.538 ± 1.437
1.179ArgArg: 1.179 ± 0.481
2.948ArgSer: 2.948 ± 0.368
2.948ArgThr: 2.948 ± 0.507
3.538ArgVal: 3.538 ± 1.108
0.59ArgTrp: 0.59 ± 0.615
6.486ArgTyr: 6.486 ± 2.443
0.0ArgXaa: 0.0 ± 0.0
Ser
5.307SerAla: 5.307 ± 0.992
1.179SerCys: 1.179 ± 0.731
2.358SerAsp: 2.358 ± 1.128
5.307SerGlu: 5.307 ± 2.663
3.538SerPhe: 3.538 ± 0.852
2.948SerGly: 2.948 ± 0.718
1.769SerHis: 1.769 ± 0.593
2.948SerIle: 2.948 ± 1.057
2.358SerLys: 2.358 ± 0.234
5.307SerLeu: 5.307 ± 1.342
1.769SerMet: 1.769 ± 0.593
2.948SerAsn: 2.948 ± 1.017
3.538SerPro: 3.538 ± 1.525
1.179SerGln: 1.179 ± 0.369
2.948SerArg: 2.948 ± 0.368
4.717SerSer: 4.717 ± 1.039
5.307SerThr: 5.307 ± 0.941
2.358SerVal: 2.358 ± 1.462
0.0SerTrp: 0.0 ± 0.0
2.358SerTyr: 2.358 ± 0.234
0.0SerXaa: 0.0 ± 0.0
Thr
4.127ThrAla: 4.127 ± 1.431
0.59ThrCys: 0.59 ± 0.365
5.307ThrAsp: 5.307 ± 1.397
6.486ThrGlu: 6.486 ± 1.554
2.948ThrPhe: 2.948 ± 0.918
4.127ThrGly: 4.127 ± 1.495
2.358ThrHis: 2.358 ± 0.913
4.127ThrIle: 4.127 ± 1.172
3.538ThrLys: 3.538 ± 1.186
7.075ThrLeu: 7.075 ± 1.095
2.358ThrMet: 2.358 ± 1.462
4.717ThrAsn: 4.717 ± 0.689
5.307ThrPro: 5.307 ± 0.578
5.896ThrGln: 5.896 ± 1.662
1.769ThrArg: 1.769 ± 0.593
2.358ThrSer: 2.358 ± 0.833
5.307ThrThr: 5.307 ± 2.24
5.307ThrVal: 5.307 ± 0.438
0.59ThrTrp: 0.59 ± 0.365
3.538ThrTyr: 3.538 ± 1.108
0.0ThrXaa: 0.0 ± 0.0
Val
5.896ValAla: 5.896 ± 1.35
0.0ValCys: 0.0 ± 0.0
1.769ValAsp: 1.769 ± 0.934
2.948ValGlu: 2.948 ± 0.903
6.486ValPhe: 6.486 ± 3.418
1.179ValGly: 1.179 ± 0.481
0.0ValHis: 0.0 ± 0.0
4.127ValIle: 4.127 ± 1.194
2.358ValLys: 2.358 ± 0.234
1.769ValLeu: 1.769 ± 0.719
0.59ValMet: 0.59 ± 0.365
4.127ValAsn: 4.127 ± 0.791
3.538ValPro: 3.538 ± 0.389
2.948ValGln: 2.948 ± 0.718
1.179ValArg: 1.179 ± 0.481
2.358ValSer: 2.358 ± 0.913
2.948ValThr: 2.948 ± 1.258
1.769ValVal: 1.769 ± 1.042
0.0ValTrp: 0.0 ± 0.0
2.948ValTyr: 2.948 ± 0.368
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.59TrpGlu: 0.59 ± 0.365
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.59TrpHis: 0.59 ± 0.365
0.0TrpIle: 0.0 ± 0.0
1.769TrpLys: 1.769 ± 0.593
0.0TrpLeu: 0.0 ± 0.0
0.59TrpMet: 0.59 ± 0.365
1.769TrpAsn: 1.769 ± 1.082
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.0TrpArg: 0.0 ± 0.0
0.0TrpSer: 0.0 ± 0.0
0.59TrpThr: 0.59 ± 0.365
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
2.948TrpTyr: 2.948 ± 0.368
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.358TyrAla: 2.358 ± 0.234
2.358TyrCys: 2.358 ± 0.913
5.307TyrAsp: 5.307 ± 0.941
4.127TyrGlu: 4.127 ± 0.659
3.538TyrPhe: 3.538 ± 1.431
2.358TyrGly: 2.358 ± 0.621
1.769TyrHis: 1.769 ± 1.303
5.896TyrIle: 5.896 ± 2.114
1.769TyrLys: 1.769 ± 0.347
5.896TyrLeu: 5.896 ± 1.35
0.0TyrMet: 0.0 ± 0.0
6.486TyrAsn: 6.486 ± 1.517
0.59TyrPro: 0.59 ± 0.615
1.769TyrGln: 1.769 ± 0.719
5.307TyrArg: 5.307 ± 0.953
4.127TyrSer: 4.127 ± 0.466
3.538TyrThr: 3.538 ± 2.192
1.179TyrVal: 1.179 ± 0.868
0.59TyrTrp: 0.59 ± 0.365
2.948TyrTyr: 2.948 ± 0.718
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (1697 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski