Dielma fastidiosa

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Dielma

Average proteome isoelectric point is 5.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3467 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A318L5U5|A0A318L5U5_9FIRM Putative ABC transport system ATP-binding protein OS=Dielma fastidiosa OX=1034346 GN=DES51_1126 PE=4 SV=1
MM1 pKa = 6.99FAAIIGKK8 pKa = 9.8GKK10 pKa = 10.26LVLLIFCLLSSMPMHH25 pKa = 6.57SFLEE29 pKa = 4.11IEE31 pKa = 4.22EE32 pKa = 4.47WEE34 pKa = 4.27DD35 pKa = 3.02TGNEE39 pKa = 3.97VLEE42 pKa = 4.92DD43 pKa = 3.51EE44 pKa = 5.39GEE46 pKa = 4.47SADD49 pKa = 4.96HH50 pKa = 6.81EE51 pKa = 4.77SADD54 pKa = 3.99EE55 pKa = 4.46DD56 pKa = 4.21SDD58 pKa = 4.17YY59 pKa = 11.73QEE61 pKa = 5.09ADD63 pKa = 2.84QGEE66 pKa = 4.65DD67 pKa = 3.62LNEE70 pKa = 3.94ATAGDD75 pKa = 4.38ILPDD79 pKa = 3.72DD80 pKa = 4.17TASDD84 pKa = 4.13SDD86 pKa = 3.92SSSDD90 pKa = 4.1IIEE93 pKa = 4.57NDD95 pKa = 3.76PLPAEE100 pKa = 4.56PSDD103 pKa = 3.9TNAEE107 pKa = 3.92PSLPDD112 pKa = 3.39TNGVCEE118 pKa = 4.35VEE120 pKa = 4.25DD121 pKa = 3.46ALGFRR126 pKa = 11.84EE127 pKa = 4.84CLAQEE132 pKa = 3.73KK133 pKa = 10.29DD134 pKa = 3.1IRR136 pKa = 11.84LTLLSDD142 pKa = 3.68VSVNAADD149 pKa = 4.87LPNADD154 pKa = 4.49TEE156 pKa = 4.36FLSIDD161 pKa = 3.9LNGHH165 pKa = 5.41QLTIVIDD172 pKa = 3.76EE173 pKa = 5.01DD174 pKa = 5.19SNFTPLRR181 pKa = 11.84CSSFQLISEE190 pKa = 4.39SEE192 pKa = 4.19HH193 pKa = 8.7AGMLSVKK200 pKa = 9.93AASSMSAPFLAVSSYY215 pKa = 11.72AFFAGSEE222 pKa = 4.07AGIQIYY228 pKa = 9.26SQSADD233 pKa = 3.14KK234 pKa = 10.56QAYY237 pKa = 7.97TMIDD241 pKa = 4.08LIGDD245 pKa = 3.87AEE247 pKa = 4.2MNAQNSRR254 pKa = 11.84FMTNTGDD261 pKa = 3.56VLTLITRR268 pKa = 11.84EE269 pKa = 4.23GNKK272 pKa = 9.94LPQTAWIEE280 pKa = 3.87FANIDD285 pKa = 3.44QHH287 pKa = 9.42AEE289 pKa = 3.82FLNQQILYY297 pKa = 9.19YY298 pKa = 8.95YY299 pKa = 10.43LPASPFLYY307 pKa = 10.67AEE309 pKa = 3.91SDD311 pKa = 3.37KK312 pKa = 11.41YY313 pKa = 10.27QVQIEE318 pKa = 4.31WGDD321 pKa = 3.36LSYY324 pKa = 11.26SYY326 pKa = 11.35DD327 pKa = 3.68GDD329 pKa = 3.66RR330 pKa = 11.84MSWQGNDD337 pKa = 3.04NLNNHH342 pKa = 5.81IRR344 pKa = 11.84VNNYY348 pKa = 9.76SLFPVMITHH357 pKa = 7.3EE358 pKa = 4.3LQLDD362 pKa = 3.7DD363 pKa = 5.51GNIKK367 pKa = 10.68GDD369 pKa = 3.59VYY371 pKa = 10.18KK372 pKa = 10.26TAGSKK377 pKa = 10.55SDD379 pKa = 3.64GSDD382 pKa = 3.06EE383 pKa = 4.13YY384 pKa = 11.36DD385 pKa = 3.4YY386 pKa = 12.05DD387 pKa = 3.79MCEE390 pKa = 3.4LAAYY394 pKa = 9.69EE395 pKa = 4.4EE396 pKa = 4.37EE397 pKa = 5.02LIAAASNLPTQLDD410 pKa = 4.39LYY412 pKa = 10.87VVLSGNPDD420 pKa = 3.22LDD422 pKa = 3.58QYY424 pKa = 11.42KK425 pKa = 9.44HH426 pKa = 5.39QKK428 pKa = 9.98QIGSLSLTVTSMEE441 pKa = 5.09NEE443 pKa = 3.97PQNLNEE449 pKa = 4.09PAEE452 pKa = 4.39AFDD455 pKa = 3.67LTIEE459 pKa = 4.19KK460 pKa = 10.86GEE462 pKa = 4.02TLILSGEE469 pKa = 4.13HH470 pKa = 5.85EE471 pKa = 4.72MNGNIYY477 pKa = 9.73RR478 pKa = 11.84VSGGGTLCFDD488 pKa = 3.45QFQAVDD494 pKa = 3.73ALDD497 pKa = 4.11GDD499 pKa = 4.32VLAEE503 pKa = 4.12CDD505 pKa = 3.9EE506 pKa = 4.78DD507 pKa = 4.41SSLIAGSHH515 pKa = 5.42QDD517 pKa = 3.17LNAYY521 pKa = 10.04RR522 pKa = 11.84FIDD525 pKa = 3.75LLGEE529 pKa = 4.06EE530 pKa = 4.62TTAGTPAVKK539 pKa = 10.43LIYY542 pKa = 9.98RR543 pKa = 11.84KK544 pKa = 10.3EE545 pKa = 4.04EE546 pKa = 4.1ADD548 pKa = 3.7VKK550 pKa = 11.51ANDD553 pKa = 3.84TNEE556 pKa = 4.26TADD559 pKa = 3.95EE560 pKa = 4.21QPQQ563 pKa = 3.16

Molecular weight: 61.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2V2FF10|A0A2V2FF10_9FIRM PTS sugar transporter subunit IIC OS=Dielma fastidiosa OX=1034346 GN=DES51_102182 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.14QPSKK9 pKa = 10.05RR10 pKa = 11.84KK11 pKa = 8.47HH12 pKa = 5.31QKK14 pKa = 6.82THH16 pKa = 4.76GFRR19 pKa = 11.84ARR21 pKa = 11.84MATVGGRR28 pKa = 11.84NVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.59GRR39 pKa = 11.84KK40 pKa = 8.44VLSAA44 pKa = 4.05

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3467

0

3467

1067974

27

4918

308.0

34.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.617 ± 0.048

1.563 ± 0.019

5.807 ± 0.038

6.907 ± 0.04

4.294 ± 0.031

6.256 ± 0.052

1.968 ± 0.023

8.035 ± 0.042

6.727 ± 0.036

9.966 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.127 ± 0.023

4.925 ± 0.032

3.05 ± 0.02

3.623 ± 0.028

3.663 ± 0.032

5.928 ± 0.034

5.066 ± 0.041

6.409 ± 0.035

0.856 ± 0.015

4.212 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski